NF0000910 | eukaryotic translation initiation factor 3 subunit f-like

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NF0000910OTHER0.9988440.0010270.000128
No Results

  • Fasta :-

    >NF0000910 MPASSLSCLLINELEQQTHTKNNSTSTNTYIYKLHPLVMLNILDHYQRVAFNSKTEIIGC LYGEFREGGYFEIKNTIPLKFNDNNTDIDVAYYKKMESLHHRVYSNDTLIGYYSISTSKT TVDKQIYQSFNDNIMKNPLVLDCTINIPSGNEPLTTRLIDFKGYINRELTFKNKVVGTLF EQVRVEYLMSDNEKLSMNYLQTNKYLQSNIVLQQTIQQLKKDLEEINKYLTSNKKSFEVY HHLLSAFQELKPVDDFDKTLNQHNKDLLMIIYLSNLLQQNLKINEQLSTTSHEL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0000910.fa Sequence name : NF0000910 Sequence length : 294 VALUES OF COMPUTED PARAMETERS Coef20 : 3.825 CoefTot : 0.456 ChDiff : -3 ZoneTo : 12 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.241 1.071 -0.200 0.398 MesoH : -1.054 -0.171 -0.558 0.080 MuHd_075 : 12.606 14.399 4.233 3.700 MuHd_095 : 13.748 13.417 4.598 4.218 MuHd_100 : 13.825 11.950 4.916 3.215 MuHd_105 : 14.814 10.041 4.857 2.249 Hmax_075 : 12.600 11.317 1.806 3.873 Hmax_095 : 12.862 12.775 2.147 4.559 Hmax_100 : 12.700 11.600 2.163 3.810 Hmax_105 : 13.700 10.400 3.215 3.020 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9200 0.0800 DFMC : 0.9295 0.0705
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 294 NF0000910 MPASSLSCLLINELEQQTHTKNNSTSTNTYIYKLHPLVMLNILDHYQRVAFNSKTEIIGCLYGEFREGGYFEIKNTIPLK 80 FNDNNTDIDVAYYKKMESLHHRVYSNDTLIGYYSISTSKTTVDKQIYQSFNDNIMKNPLVLDCTINIPSGNEPLTTRLID 160 FKGYINRELTFKNKVVGTLFEQVRVEYLMSDNEKLSMNYLQTNKYLQSNIVLQQTIQQLKKDLEEINKYLTSNKKSFEVY 240 HHLLSAFQELKPVDDFDKTLNQHNKDLLMIIYLSNLLQQNLKINEQLSTTSHEL 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0000910 21 EQQTHTK|NN 0.085 . NF0000910 33 TNTYIYK|LH 0.060 . NF0000910 48 ILDHYQR|VA 0.089 . NF0000910 54 RVAFNSK|TE 0.058 . NF0000910 66 CLYGEFR|EG 0.086 . NF0000910 74 GGYFEIK|NT 0.062 . NF0000910 80 KNTIPLK|FN 0.068 . NF0000910 94 IDVAYYK|KM 0.060 . NF0000910 95 DVAYYKK|ME 0.082 . NF0000910 102 MESLHHR|VY 0.108 . NF0000910 119 YSISTSK|TT 0.061 . NF0000910 124 SKTTVDK|QI 0.078 . NF0000910 136 FNDNIMK|NP 0.057 . NF0000910 157 NEPLTTR|LI 0.081 . NF0000910 162 TRLIDFK|GY 0.076 . NF0000910 167 FKGYINR|EL 0.088 . NF0000910 172 NRELTFK|NK 0.062 . NF0000910 174 ELTFKNK|VV 0.090 . NF0000910 184 TLFEQVR|VE 0.072 . NF0000910 194 LMSDNEK|LS 0.072 . NF0000910 204 NYLQTNK|YL 0.058 . NF0000910 220 QTIQQLK|KD 0.055 . NF0000910 221 TIQQLKK|DL 0.172 . NF0000910 228 DLEEINK|YL 0.063 . NF0000910 234 KYLTSNK|KS 0.065 . NF0000910 235 YLTSNKK|SF 0.132 . NF0000910 251 SAFQELK|PV 0.084 . NF0000910 258 PVDDFDK|TL 0.064 . NF0000910 265 TLNQHNK|DL 0.097 . NF0000910 282 LLQQNLK|IN 0.065 . ____________________________^_________________

  • Fasta :-

    >NF0000910 ATGCCAGCAAGCAGCTTAAGTTGTCTTCTCATCAATGAGCTCGAACAACAGACTCATACT AAAAACAATAGTACCAGCACAAATACTTATATTTATAAACTCCATCCTTTGGTAATGTTG AATATTTTGGATCATTACCAAAGAGTTGCTTTCAATTCAAAGACCGAAATTATCGGATGT TTATACGGAGAGTTTAGAGAAGGAGGATACTTTGAAATTAAGAATACTATTCCATTGAAA TTCAACGATAACAACACCGATATTGATGTTGCTTATTATAAGAAGATGGAAAGCCTTCAT CATCGCGTTTATTCAAACGATACATTGATTGGTTACTATAGTATTTCTACATCAAAAACA ACAGTTGATAAACAAATTTATCAATCATTCAATGACAACATTATGAAGAATCCACTTGTG CTTGATTGTACCATCAACATTCCTTCAGGAAACGAGCCACTTACAACAAGATTGATTGAT TTCAAAGGATACATTAACAGAGAATTGACATTCAAGAATAAGGTTGTTGGTACTTTATTT GAGCAAGTTAGAGTTGAATATCTCATGTCGGATAATGAAAAGTTGTCAATGAACTATCTT CAAACTAACAAGTACTTGCAAAGCAATATTGTCCTACAACAAACTATTCAACAATTGAAG AAAGATTTGGAAGAAATCAACAAGTACTTGACTTCTAATAAGAAGAGCTTTGAAGTTTAT CACCACTTGTTATCTGCATTCCAAGAATTGAAACCAGTCGATGATTTCGATAAGACACTC AATCAACACAACAAGGACTTACTCATGATTATTTATTTGTCAAACCTCTTGCAACAAAAC TTGAAGATTAATGAACAGTTGAGTACTACCTCTCATGAGTTGTAA
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  • Fasta :-

    MPASSLSCLLINELEQQTHTKNNSTSTNTYIYKLHPLVMLNILDHYQRVAFNSKTEIIGC LYGEFREGGYFEIKNTIPLKFNDNNTDIDVAYYKKMESLHHRVYSNDTLIGYYSISTSKT TVDKQIYQSFNDNIMKNPLVLDCTINIPSGNEPLTTRLIDFKGYINRELTFKNKVVGTLF EQVRVEYLMSDNEKLSMNYLQTNKYLQSNIVLQQTIQQLKKDLEEINKYLTSNKKSFEVY HHLLSAFQELKPVDDFDKTLNQHNKDLLMIIYLSNLLQQNLKINEQLSTTSHEL

    No Results
No Results
No Results
IDSitePeptideScoreMethod
NF0000910288 SNEQLSTTSH0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India