NF0004560 | hypothetical protein NAEGRDRAFT 78521

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      GO:0008270      

  • Computed_GO_Functions:  protein binding      zinc ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NF0004560OTHER0.9999890.0000110.000000
No Results

  • Fasta :-

    >NF0004560 MANVNIDCVICNEIVKCNRECKSCGALYCYDCIKQWIDRSGSCPHCRKTFLMLRDLNDDS SFLHNRFVEKLADDSEVDCPNMCSQGKVKRGNLKEHLEKFCENIIRPCAMKKFGCNFEGN FNQLQNHKNECAYIKLAGVLESYENTITDLRRKCANAQQGEEFKMKISTLEQTNELLRLE NDELKEKVRKLQKQAQHSSTQQSSSSQNNNANTSTYLIIPNLQRQNNS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0004560.fa Sequence name : NF0004560 Sequence length : 228 VALUES OF COMPUTED PARAMETERS Coef20 : 3.990 CoefTot : -0.127 ChDiff : 3 ZoneTo : 6 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : -0.471 0.935 -0.098 0.273 MesoH : -1.949 -0.231 -0.555 -0.084 MuHd_075 : 27.073 20.645 6.062 6.267 MuHd_095 : 6.617 7.804 2.945 3.323 MuHd_100 : 6.918 6.366 4.145 2.109 MuHd_105 : 15.379 9.813 6.587 2.310 Hmax_075 : 12.250 21.117 3.053 6.207 Hmax_095 : 2.450 13.125 1.117 4.104 Hmax_100 : 3.000 10.900 1.734 3.590 Hmax_105 : 2.600 11.200 1.984 2.928 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9663 0.0337 DFMC : 0.9821 0.0179
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 228 NF0004560 MANVNIDCVICNEIVKCNRECKSCGALYCYDCIKQWIDRSGSCPHCRKTFLMLRDLNDDSSFLHNRFVEKLADDSEVDCP 80 NMCSQGKVKRGNLKEHLEKFCENIIRPCAMKKFGCNFEGNFNQLQNHKNECAYIKLAGVLESYENTITDLRRKCANAQQG 160 EEFKMKISTLEQTNELLRLENDELKEKVRKLQKQAQHSSTQQSSSSQNNNANTSTYLIIPNLQRQNNS 240 ................................................................................ 80 ................................................................................ 160 .................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0004560 16 ICNEIVK|CN 0.062 . NF0004560 19 EIVKCNR|EC 0.071 . NF0004560 22 KCNRECK|SC 0.308 . NF0004560 34 YCYDCIK|QW 0.063 . NF0004560 39 IKQWIDR|SG 0.109 . NF0004560 47 GSCPHCR|KT 0.120 . NF0004560 48 SCPHCRK|TF 0.068 . NF0004560 54 KTFLMLR|DL 0.080 . NF0004560 66 SSFLHNR|FV 0.206 . NF0004560 70 HNRFVEK|LA 0.102 . NF0004560 87 NMCSQGK|VK 0.064 . NF0004560 89 CSQGKVK|RG 0.068 . NF0004560 90 SQGKVKR|GN 0.241 . NF0004560 94 VKRGNLK|EH 0.059 . NF0004560 99 LKEHLEK|FC 0.077 . NF0004560 106 FCENIIR|PC 0.084 . NF0004560 111 IRPCAMK|KF 0.073 . NF0004560 112 RPCAMKK|FG 0.128 . NF0004560 128 NQLQNHK|NE 0.058 . NF0004560 135 NECAYIK|LA 0.079 . NF0004560 151 NTITDLR|RK 0.067 . NF0004560 152 TITDLRR|KC 0.139 . NF0004560 153 ITDLRRK|CA 0.104 . NF0004560 164 QQGEEFK|MK 0.068 . NF0004560 166 GEEFKMK|IS 0.077 . NF0004560 178 QTNELLR|LE 0.082 . NF0004560 185 LENDELK|EK 0.061 . NF0004560 187 NDELKEK|VR 0.052 . NF0004560 189 ELKEKVR|KL 0.104 . NF0004560 190 LKEKVRK|LQ 0.101 . NF0004560 193 KVRKLQK|QA 0.071 . NF0004560 224 IIPNLQR|QN 0.080 . ____________________________^_________________

  • Fasta :-

    >NF0004560 ATGGCGAATGTGAATATTGATTGCGTGATTTGTAATGAAATTGTCAAGTGCAACCGAGAA TGTAAAAGTTGTGGTGCTTTGTATTGTTATGATTGCATTAAACAGTGGATAGATCGCTCG GGATCATGTCCACATTGTAGAAAGACTTTTCTCATGCTCCGAGATTTGAATGATGATTCA TCCTTTCTTCATAACCGATTTGTCGAAAAATTGGCTGATGATTCCGAAGTTGATTGTCCA AATATGTGTTCTCAAGGAAAAGTGAAGAGAGGTAATTTAAAAGAACATTTGGAGAAGTTT TGTGAGAATATCATTCGACCCTGTGCAATGAAAAAGTTCGGATGTAACTTTGAGGGTAAT TTTAATCAATTACAAAATCACAAAAACGAATGTGCATATATAAAGTTGGCAGGTGTTCTG GAATCGTATGAAAATACAATTACAGATTTGAGAAGAAAATGTGCAAACGCTCAACAGGGA GAAGAGTTCAAAATGAAAATATCGACATTGGAGCAAACTAACGAATTGTTAAGATTAGAA AATGACGAATTGAAAGAAAAAGTCAGAAAACTGCAGAAACAAGCTCAACATTCTTCGACA CAACAGTCAAGCTCTTCACAGAACAATAATGCCAATACCAGCACATATCTCATCATCCCC AATCTTCAACGACAGAACAACAGTTAAACAAATACTAATAATTTTTCCCATAATCAAAAT AGTAGTAACAAGGATAATTGCAAACAGCAATGATTCATAAAAACGAATC
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  • Fasta :-

    MANVNIDCVICNEIVKCNRECKSCGALYCYDCIKQWIDRSGSCPHCRKTFLMLRDLNDDS SFLHNRFVEKLADDSEVDCPNMCSQGKVKRGNLKEHLEKFCENIIRPCAMKKFGCNFEGN FNQLQNHKNECAYIKLAGVLESYENTITDLRRKCANAQQGEEFKMKISTLEQTNELLRLE NDELKEKVRKLQKQAQHSSTQQSSSSQNNNANTSTYLIIPNLQRQNNS

  • title: cross-brace motif
  • coordinates: C8,C11,C24,A26,C29,C32,C43,C46
No Results
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India