NF0013300 | proteasome subunit beta type-6-like

UniProt_ID:

Computed_GO_Component_IDs: GO:0005839
Computed_GO_Components: proteasome core complex
Computed_GO_Function_IDs: GO:0004298
Computed_GO_Functions: threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0013300	OTHER	0.999800	0.000092	0.000108

No Results

Fasta :-
>NF0013300 MYNTHDLFHSKDKPVTHPSAPLLQHNNYSEALPFEDPLRDMQEAHSMGTSIMAVEFDGGV VIGADSRTTTGSYIANRVSDKLTPVHDRIYVCRSGSAADTQQISDYVRYFLKIHSVEVGT LPLVETAANLFKDFCYNYKDQLLAGIICAGWDEKNGGSVWTIPLGGTLIREPFSIGGSGS TYIYGYCDANFKKGMTKDECKQFVRNALSLAMARDGSSGGVVRLAVITKDGVEREVHHEG PGGTLPKHYSD
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0013300.fa Sequence name : NF0013300 Sequence length : 251 VALUES OF COMPUTED PARAMETERS Coef20 : 3.011 CoefTot : -0.530 ChDiff : -6 ZoneTo : 5 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.853 1.171 0.069 0.544 MesoH : -0.371 0.254 -0.287 0.268 MuHd_075 : 14.167 6.743 3.612 1.044 MuHd_095 : 17.739 17.298 7.299 3.429 MuHd_100 : 22.910 17.982 7.365 4.482 MuHd_105 : 23.645 15.126 6.033 4.682 Hmax_075 : 0.467 -3.150 -4.773 1.027 Hmax_095 : -0.100 2.000 -3.374 1.540 Hmax_100 : 4.700 6.500 -1.623 2.610 Hmax_105 : 3.937 4.287 -1.815 2.389 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9796 0.0204 DFMC : 0.9779 0.0221

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 251 NF0013300 MYNTHDLFHSKDKPVTHPSAPLLQHNNYSEALPFEDPLRDMQEAHSMGTSIMAVEFDGGVVIGADSRTTTGSYIANRVSD 80 KLTPVHDRIYVCRSGSAADTQQISDYVRYFLKIHSVEVGTLPLVETAANLFKDFCYNYKDQLLAGIICAGWDEKNGGSVW 160 TIPLGGTLIREPFSIGGSGSTYIYGYCDANFKKGMTKDECKQFVRNALSLAMARDGSSGGVVRLAVITKDGVEREVHHEG 240 PGGTLPKHYSD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0013300 11 HDLFHSK|DK 0.069 . NF0013300 13 LFHSKDK|PV 0.074 . NF0013300 39 PFEDPLR|DM 0.097 . NF0013300 67 VIGADSR|TT 0.077 . NF0013300 77 GSYIANR|VS 0.102 . NF0013300 81 ANRVSDK|LT 0.070 . NF0013300 88 LTPVHDR|IY 0.071 . NF0013300 93 DRIYVCR|SG 0.214 . NF0013300 108 QISDYVR|YF 0.108 . NF0013300 112 YVRYFLK|IH 0.070 . NF0013300 132 TAANLFK|DF 0.077 . NF0013300 139 DFCYNYK|DQ 0.061 . NF0013300 154 CAGWDEK|NG 0.062 . NF0013300 170 LGGTLIR|EP 0.090 . NF0013300 192 YCDANFK|KG 0.055 . NF0013300 193 CDANFKK|GM 0.135 . NF0013300 197 FKKGMTK|DE 0.076 . NF0013300 201 MTKDECK|QF 0.060 . NF0013300 205 ECKQFVR|NA 0.077 . NF0013300 214 LSLAMAR|DG 0.112 . NF0013300 223 SSGGVVR|LA 0.101 . NF0013300 229 RLAVITK|DG 0.074 . NF0013300 234 TKDGVER|EV 0.177 . NF0013300 247 PGGTLPK|HY 0.081 . ____________________________^_________________

Fasta :-
>NF0013300 ATGTACAATACTCACGATCTGTTCCACTCCAAAGACAAGCCAGTCACTCATCCTTCGGCA CCTTTATTACAACACAACAATTATTCTGAAGCCCTTCCTTTTGAAGACCCTCTCAGGGAT ATGCAAGAGGCTCACTCTATGGGTACATCTATTATGGCTGTTGAATTTGATGGCGGAGTG GTGATTGGAGCTGATTCTCGTACCACCACCGGAAGTTATATTGCGAATAGAGTTTCTGAT AAGCTTACACCTGTTCATGATAGAATTTATGTTTGTCGTTCTGGATCAGCAGCTGACACA CAACAGATCTCAGATTATGTTCGTTATTTCTTGAAAATTCACTCGGTTGAAGTCGGCACA TTGCCATTGGTAGAGACAGCTGCAAACTTGTTCAAAGATTTTTGTTATAATTATAAAGAT CAATTGCTTGCTGGTATAATTTGTGCAGGCTGGGACGAAAAGAATGGAGGAAGTGTTTGG ACGATTCCATTAGGAGGAACTCTCATTAGAGAACCTTTCAGCATTGGTGGATCAGGAAGT ACTTATATTTATGGTTATTGTGATGCAAACTTTAAGAAAGGAATGACCAAGGATGAGTGT AAGCAGTTTGTGAGGAATGCATTGTCTCTTGCTATGGCTCGTGACGGAAGCAGTGGTGGT GTCGTTCGTCTTGCTGTCATCACGAAAGATGGCGTAGAAAGAGAAGTCCACCATGAAGGT CCAGGAGGTACATTACCAAAACACTACTCTGATTAG
Download Fasta

Fasta :-

MYNTHDLFHSKDKPVTHPSAPLLQHNNYSEALPFEDPLRDMQEAHSMGTSIMAVEFDGGV VIGADSRTTTGSYIANRVSDKLTPVHDRIYVCRSGSAADTQQISDYVRYFLKIHSVEVGT LPLVETAANLFKDFCYNYKDQLLAGIICAGWDEKNGGSVWTIPLGGTLIREPFSIGGSGS TYIYGYCDANFKKGMTKDECKQFVRNALSLAMARDGSSGGVVRLAVITKDGVEREVHHEG PGGTLPKHYSD

Proteasome subunits

title: active site
coordinates: T49,D65,R67,K81,S178,D215,S218,G219

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0013300	T	4	0.516	0.068	NF0013300	S	250	0.505	0.056

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0013300	T	4	0.516	0.068	NF0013300	S	250	0.505	0.056

	ID	Site	Peptide	Score	Method
	NF0013300	79 S	ANRVSDKLT	0.995	unsp

NF0013300 | proteasome subunit beta type-6-like

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs: GO:0005839

Computed_GO_Components: proteasome core complex

Computed_GO_Function_IDs: GO:0004298

Computed_GO_Functions: threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India