NF0016230 | atp-dependent clp protease atp-binding protein

UniProt_ID:

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs:
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Computed_GO_Process_IDs:
Computed_GO_Processes:
Curated_GO_Component_IDs:
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Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0016230	OTHER	0.999917	0.000032	0.000051

No Results

Fasta :-
>NF0016230 MIIQQQPHASSKATTRTETSSSDMLPSDPIRKGWKDTQPQRKIVKISSSSEHDDLSTTPT TDVNNSNTSSSPSQAPSLQQGPIGQVFQSLREKVSTLLFNHQYWNLFSQASSSSSTDKSK MHENESHIQFIGQIRPPFIIERFDKPQVNNNGKKMIVRKIVPLLQLENYLNKCLVNQEIA IKTICYCLLRQSTIWSYSYHQLSSSSENSEQTQDELQKKQFMKKTKIPLSLFFIGPLGVG KLYISRLIAQSQGRPFVLFDMNYFTEEESLSNLVQFSDEYRYNQPFNYMLGQLNVVLETA PNAVIVFNNMEYAHPSIFRFLHQLFRAGLILEQKSRKDVNYKAQHSGSLATDQSLESSAN KRTDKKKATADIKKPLEEELVRVIDASQAIFICISVISDQMVKKNILENGPNTLIDKYEQ EKKSVQNNNYQSQSSYSASQFPYEDTYLNNDENEFSTLQFKPMKKQSQLRKPSTLTDRAS TLNSTTTNSTTGYLEQVSSAYSAIDALDRVIEFRHHITPFLVDHLNNSNKSEENKMPKCF DAFLHQFNAIVPFFAFSDVELCHQIITQLSTFSSFANSQKCYKLTWSEDVVIWLMKRYRP SLTVTGVLENHVLTPLAAADHLFSPHDHIHLEVSPELDRISITVLNRRDDTQLRRDLSLI QSKL
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0016230.fa Sequence name : NF0016230 Sequence length : 664 VALUES OF COMPUTED PARAMETERS Coef20 : 4.040 CoefTot : -0.429 ChDiff : 2 ZoneTo : 17 KR : 2 DE : 0 CleavSite : 18 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.288 1.818 0.158 0.645 MesoH : -0.295 0.355 -0.357 0.223 MuHd_075 : 8.478 3.668 1.801 2.372 MuHd_095 : 21.268 13.134 7.189 5.108 MuHd_100 : 20.168 13.534 7.393 4.317 MuHd_105 : 18.264 11.630 6.624 2.823 Hmax_075 : 4.550 1.400 -1.979 1.590 Hmax_095 : 2.888 1.400 -1.915 1.356 Hmax_100 : 7.100 7.600 0.460 2.960 Hmax_105 : 8.750 5.367 0.586 2.170 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9064 0.0936 DFMC : 0.8941 0.1059

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 664 NF0016230 MIIQQQPHASSKATTRTETSSSDMLPSDPIRKGWKDTQPQRKIVKISSSSEHDDLSTTPTTDVNNSNTSSSPSQAPSLQQ 80 GPIGQVFQSLREKVSTLLFNHQYWNLFSQASSSSSTDKSKMHENESHIQFIGQIRPPFIIERFDKPQVNNNGKKMIVRKI 160 VPLLQLENYLNKCLVNQEIAIKTICYCLLRQSTIWSYSYHQLSSSSENSEQTQDELQKKQFMKKTKIPLSLFFIGPLGVG 240 KLYISRLIAQSQGRPFVLFDMNYFTEEESLSNLVQFSDEYRYNQPFNYMLGQLNVVLETAPNAVIVFNNMEYAHPSIFRF 320 LHQLFRAGLILEQKSRKDVNYKAQHSGSLATDQSLESSANKRTDKKKATADIKKPLEEELVRVIDASQAIFICISVISDQ 400 MVKKNILENGPNTLIDKYEQEKKSVQNNNYQSQSSYSASQFPYEDTYLNNDENEFSTLQFKPMKKQSQLRKPSTLTDRAS 480 TLNSTTTNSTTGYLEQVSSAYSAIDALDRVIEFRHHITPFLVDHLNNSNKSEENKMPKCFDAFLHQFNAIVPFFAFSDVE 560 LCHQIITQLSTFSSFANSQKCYKLTWSEDVVIWLMKRYRPSLTVTGVLENHVLTPLAAADHLFSPHDHIHLEVSPELDRI 640 SITVLNRRDDTQLRRDLSLIQSKL 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ........................ 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0016230 12 QPHASSK|AT 0.091 . NF0016230 16 SSKATTR|TE 0.089 . NF0016230 31 LPSDPIR|KG 0.090 . NF0016230 32 PSDPIRK|GW 0.105 . NF0016230 35 PIRKGWK|DT 0.089 . NF0016230 41 KDTQPQR|KI 0.084 . NF0016230 42 DTQPQRK|IV 0.121 . NF0016230 45 PQRKIVK|IS 0.077 . NF0016230 91 QVFQSLR|EK 0.069 . NF0016230 93 FQSLREK|VS 0.061 . NF0016230 118 SSSSTDK|SK 0.122 . NF0016230 120 SSTDKSK|MH 0.072 . NF0016230 135 QFIGQIR|PP 0.091 . NF0016230 142 PPFIIER|FD 0.099 . NF0016230 145 IIERFDK|PQ 0.102 . NF0016230 153 QVNNNGK|KM 0.060 . NF0016230 154 VNNNGKK|MI 0.123 . NF0016230 158 GKKMIVR|KI 0.098 . NF0016230 159 KKMIVRK|IV 0.112 . NF0016230 172 LENYLNK|CL 0.068 . NF0016230 182 NQEIAIK|TI 0.062 . NF0016230 190 ICYCLLR|QS 0.070 . NF0016230 218 TQDELQK|KQ 0.061 . NF0016230 219 QDELQKK|QF 0.124 . NF0016230 223 QKKQFMK|KT 0.073 . NF0016230 224 KKQFMKK|TK 0.095 . NF0016230 226 QFMKKTK|IP 0.064 . NF0016230 241 GPLGVGK|LY 0.062 . NF0016230 246 GKLYISR|LI 0.085 . NF0016230 254 IAQSQGR|PF 0.077 . NF0016230 281 QFSDEYR|YN 0.105 . NF0016230 319 AHPSIFR|FL 0.126 . NF0016230 326 FLHQLFR|AG 0.077 . NF0016230 334 GLILEQK|SR 0.069 . NF0016230 336 ILEQKSR|KD 0.082 . NF0016230 337 LEQKSRK|DV 0.173 . NF0016230 342 RKDVNYK|AQ 0.068 . NF0016230 361 LESSANK|RT 0.076 . NF0016230 362 ESSANKR|TD 0.210 . NF0016230 365 ANKRTDK|KK 0.117 . NF0016230 366 NKRTDKK|KA 0.119 . NF0016230 367 KRTDKKK|AT 0.159 . NF0016230 373 KATADIK|KP 0.057 . NF0016230 374 ATADIKK|PL 0.122 . NF0016230 382 LEEELVR|VI 0.095 . NF0016230 403 ISDQMVK|KN 0.054 . NF0016230 404 SDQMVKK|NI 0.130 . NF0016230 417 PNTLIDK|YE 0.058 . NF0016230 422 DKYEQEK|KS 0.061 . NF0016230 423 KYEQEKK|SV 0.184 . NF0016230 461 FSTLQFK|PM 0.058 . NF0016230 464 LQFKPMK|KQ 0.070 . NF0016230 465 QFKPMKK|QS 0.080 . NF0016230 470 KKQSQLR|KP 0.096 . NF0016230 471 KQSQLRK|PS 0.089 . NF0016230 478 PSTLTDR|AS 0.073 . NF0016230 509 AIDALDR|VI 0.078 . NF0016230 514 DRVIEFR|HH 0.091 . NF0016230 530 HLNNSNK|SE 0.103 . NF0016230 535 NKSEENK|MP 0.064 . NF0016230 538 EENKMPK|CF 0.090 . NF0016230 580 SFANSQK|CY 0.059 . NF0016230 583 NSQKCYK|LT 0.067 . NF0016230 596 VVIWLMK|RY 0.066 . NF0016230 597 VIWLMKR|YR 0.106 . NF0016230 599 WLMKRYR|PS 0.102 . NF0016230 639 VSPELDR|IS 0.076 . NF0016230 647 SITVLNR|RD 0.092 . NF0016230 648 ITVLNRR|DD 0.155 . NF0016230 654 RDDTQLR|RD 0.067 . NF0016230 655 DDTQLRR|DL 0.143 . NF0016230 663 LSLIQSK|L- 0.062 . ____________________________^_________________

Fasta :-
>NF0016230 ATGATCATTCAACAACAGCCTCACGCTTCAAGCAAAGCAACAACACGTACGGAAACATCT TCTTCGGATATGCTACCATCGGATCCTATCCGGAAAGGTTGGAAGGATACTCAACCACAA CGAAAAATTGTGAAAATTTCTTCTTCATCGGAGCATGATGATTTATCAACAACACCAACA ACAGATGTAAATAATAGTAACACTTCTTCAAGTCCATCGCAGGCACCTTCTTTACAACAA GGCCCCATTGGTCAAGTGTTTCAATCATTACGAGAAAAAGTTTCCACTCTTTTATTTAAT CACCAATATTGGAATTTATTTTCACAAGCATCCTCTTCATCATCAACGGACAAATCCAAA ATGCATGAAAATGAAAGCCATATACAGTTTATTGGGCAAATTCGACCACCTTTCATTATC GAAAGATTTGATAAACCACAAGTGAACAACAACGGAAAAAAGATGATTGTACGGAAAATT GTGCCACTTTTGCAATTGGAAAATTATTTAAACAAGTGTTTGGTCAATCAGGAGATTGCC ATCAAGACAATATGTTATTGCCTTTTGAGACAGTCAACGATATGGTCATATTCATATCAT CAATTATCGTCAAGCTCTGAAAATTCTGAACAAACTCAAGACGAGTTACAAAAGAAACAA TTCATGAAAAAAACGAAAATTCCACTCTCCTTGTTTTTTATAGGTCCATTAGGTGTTGGA AAATTGTATATTTCTCGTCTGATAGCTCAGTCTCAAGGAAGACCTTTCGTGCTTTTCGAT ATGAATTATTTTACGGAAGAAGAATCGTTATCGAATTTGGTTCAATTTTCAGACGAATAT CGATACAATCAACCTTTCAATTACATGCTTGGGCAATTGAATGTGGTTTTAGAAACGGCC CCAAATGCTGTAATAGTTTTCAACAATATGGAATATGCCCATCCTTCCATTTTCAGATTT TTACATCAACTATTCAGAGCAGGATTAATACTTGAACAAAAATCGAGAAAAGATGTCAAC TACAAGGCACAGCATTCTGGCTCACTGGCAACAGACCAATCATTGGAATCATCAGCCAAC AAACGCACGGATAAAAAGAAGGCAACTGCAGATATCAAAAAACCGCTCGAGGAAGAACTC GTACGCGTGATTGACGCTAGTCAAGCCATATTTATTTGCATTTCTGTAATTAGCGATCAA ATGGTCAAGAAAAATATCTTAGAGAATGGACCAAACACCCTAATTGACAAGTACGAGCAA GAAAAGAAGTCCGTTCAGAACAATAACTATCAATCTCAGTCATCCTACAGCGCGTCTCAA TTTCCATACGAAGATACTTACCTCAATAATGACGAAAATGAATTTTCGACTTTACAATTC AAACCCATGAAGAAGCAATCACAATTAAGGAAGCCATCCACCTTGACCGATAGAGCAAGC ACTTTGAATTCTACTACTACAAATTCCACAACTGGATATCTTGAACAAGTTTCATCAGCA TATTCAGCAATTGATGCTCTCGATCGAGTCATTGAATTTCGACACCATATCACTCCTTTT TTAGTTGATCATTTGAATAATTCAAACAAATCAGAAGAAAACAAAATGCCAAAATGCTTT GATGCTTTTCTGCATCAGTTCAATGCAATTGTACCATTTTTTGCATTTTCAGATGTTGAA TTGTGTCATCAAATAATTACACAACTTTCAACATTCTCCTCATTTGCCAACTCACAGAAA TGTTACAAATTAACTTGGAGTGAAGATGTTGTCATATGGTTAATGAAACGATATAGACCT TCGTTAACGGTAACTGGTGTTTTGGAGAATCATGTGTTGACTCCTCTGGCTGCTGCTGAT CACTTGTTTTCACCTCATGATCACATTCATCTTGAGGTTTCACCTGAGCTCGATAGAATT TCCATTACCGTTTTGAATCGGCGTGATGATACACAGTTGAGAAGAGATTTGAGTTTGATT CAATCCAAACTGTGA
Download Fasta

Fasta :-

MIIQQQPHASSKATTRTETSSSDMLPSDPIRKGWKDTQPQRKIVKISSSSEHDDLSTTPT TDVNNSNTSSSPSQAPSLQQGPIGQVFQSLREKVSTLLFNHQYWNLFSQASSSSSTDKSK MHENESHIQFIGQIRPPFIIERFDKPQVNNNGKKMIVRKIVPLLQLENYLNKCLVNQEIA IKTICYCLLRQSTIWSYSYHQLSSSSENSEQTQDELQKKQFMKKTKIPLSLFFIGPLGVG KLYISRLIAQSQGRPFVLFDMNYFTEEESLSNLVQFSDEYRYNQPFNYMLGQLNVVLETA PNAVIVFNNMEYAHPSIFRFLHQLFRAGLILEQKSRKDVNYKAQHSGSLATDQSLESSAN KRTDKKKATADIKKPLEEELVRVIDASQAIFICISVISDQMVKKNILENGPNTLIDKYEQ EKKSVQNNNYQSQSSYSASQFPYEDTYLNNDENEFSTLQFKPMKKQSQLRKPSTLTDRAS TLNSTTTNSTTGYLEQVSSAYSAIDALDRVIEFRHHITPFLVDHLNNSNKSEENKMPKCF DAFLHQFNAIVPFFAFSDVELCHQIITQLSTFSSFANSQKCYKLTWSEDVVIWLMKRYRP SLTVTGVLENHVLTPLAAADHLFSPHDHIHLEVSPELDRISITVLNRRDDTQLRRDLSLI QSKL

Extended AAA-ATPase domain

title: ATP binding site
coordinates: P236,L237,G238,V239,G240,K241,L242,Y243,N308

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0016230	T	61	0.626	0.072	NF0016230	T	68	0.573	0.031	NF0016230	T	60	0.568	0.291	NF0016230	T	58	0.563	0.413	NF0016230	T	57	0.519	0.235	NF0016230	T	15	0.505	0.030

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0016230	T	61	0.626	0.072	NF0016230	T	68	0.573	0.031	NF0016230	T	60	0.568	0.291	NF0016230	T	58	0.563	0.413	NF0016230	T	57	0.519	0.235	NF0016230	T	15	0.505	0.030

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NF0016230	50 S	ISSSSEHDD	0.997	unsp	NF0016230	50 S	ISSSSEHDD	0.997	unsp	NF0016230	50 S	ISSSSEHDD	0.997	unsp	NF0016230	71 S	NTSSSPSQA	0.995	unsp	NF0016230	335 S	LEQKSRKDV	0.996	unsp	NF0016230	447 Y	YEDTYLNND	0.991	unsp	NF0016230	578 S	SFANSQKCY	0.992	unsp	NF0016230	624 S	DHLFSPHDH	0.996	unsp	NF0016230	20 S	RTETSSSDM	0.995	unsp	NF0016230	48 S	VKISSSSEH	0.995	unsp

NF0016230 | atp-dependent clp protease atp-binding protein

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs:

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Computed_GO_Function_IDs:

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Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Extended AAA-ATPase domain

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India