NF0021730 | atp-dependent protease

UniProt_ID:

Computed_GO_Component_IDs: GO:0009376 GO:0005737
Computed_GO_Components: HslUV protease complex cytoplasm
Computed_GO_Function_IDs: GO:0005524 GO:0016887 GO:0070011
Computed_GO_Functions: ATP binding ATPase activity peptidase activity, acting on L-amino acid peptides
Computed_GO_Process_IDs:
Computed_GO_Processes:
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0021730	mTP	0.228695	0.000136	0.771168	CS pos: 66-67. RSF-ST. Pr: 0.2620

No Results

Fasta :-
>NF0021730 MLMSTCCNGNNRKLLSRTLLSKNVLLKSTASTTSRKVNQFYPIIITTNTTTSTTTLSFTS SSLRSFSTIHNFQRNSSFEEDDYSTNPMNNSDSGAKTEEEKSIEEILRTKTSLTPSEIVN QLDRYIVGQGDAKRAVAIALRNRWRRQQLDGSIRDEIIPKNILMIGPTGVGKTEIARRLS KLAHAPFIKTEATKYTEVGFHGRDVDTIIRDLVDVGIQHTKDRLRSAYKTKAHELAEQKI IETLTGKKKPTPEDAAFRDWREQLRNGILDDKEIEVELPIEKPNAGMMRGGAAMGRGVQG TPIDIQDLLSPLFGASGGKTRKRRMKIKDCLPKLEESEVEKLLQTDIVIKEAIRSVEEDG IVFIDEIDKICSSFKDGHDASSEGVQRDLLPIIEGTTISTKYGNVKTDHILFIACGAFHS VKPSDMLAELQGRLPIRVELKGLTEKDLYRVLTEPETNILRQNIELLKTEGVDIEFSEDG VKEIARVAAEVNTTVENIGARRLITIVEKILEDISFNAPTLKGQKIVITEKEVQQHIGVL LKRADLKKFIL
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0021730.fa Sequence name : NF0021730 Sequence length : 551 VALUES OF COMPUTED PARAMETERS Coef20 : 4.694 CoefTot : 0.861 ChDiff : 2 ZoneTo : 78 KR : 9 DE : 0 CleavSite : 76 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.353 1.012 0.058 0.416 MesoH : -0.550 0.137 -0.413 0.143 MuHd_075 : 59.169 35.717 16.441 13.346 MuHd_095 : 34.482 22.503 9.582 8.191 MuHd_100 : 31.986 22.275 7.702 7.594 MuHd_105 : 36.315 21.722 8.836 8.872 Hmax_075 : 17.800 22.500 3.753 6.550 Hmax_095 : 15.900 11.987 2.495 4.620 Hmax_100 : 13.500 10.700 1.834 3.790 Hmax_105 : 16.600 7.200 1.931 4.590 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0008 0.9992 DFMC : 0.0002 0.9998 This protein is probably imported in chloroplast. f(Ser) = 0.1923 f(Arg) = 0.0641 CMi = 1.20385 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 551 NF0021730 MLMSTCCNGNNRKLLSRTLLSKNVLLKSTASTTSRKVNQFYPIIITTNTTTSTTTLSFTSSSLRSFSTIHNFQRNSSFEE 80 DDYSTNPMNNSDSGAKTEEEKSIEEILRTKTSLTPSEIVNQLDRYIVGQGDAKRAVAIALRNRWRRQQLDGSIRDEIIPK 160 NILMIGPTGVGKTEIARRLSKLAHAPFIKTEATKYTEVGFHGRDVDTIIRDLVDVGIQHTKDRLRSAYKTKAHELAEQKI 240 IETLTGKKKPTPEDAAFRDWREQLRNGILDDKEIEVELPIEKPNAGMMRGGAAMGRGVQGTPIDIQDLLSPLFGASGGKT 320 RKRRMKIKDCLPKLEESEVEKLLQTDIVIKEAIRSVEEDGIVFIDEIDKICSSFKDGHDASSEGVQRDLLPIIEGTTIST 400 KYGNVKTDHILFIACGAFHSVKPSDMLAELQGRLPIRVELKGLTEKDLYRVLTEPETNILRQNIELLKTEGVDIEFSEDG 480 VKEIARVAAEVNTTVENIGARRLITIVEKILEDISFNAPTLKGQKIVITEKEVQQHIGVLLKRADLKKFIL 560 ................................................................................ 80 .................................................................P.............. 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ....................................................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ NF0021730 12 CCNGNNR|KL 0.070 . NF0021730 13 CNGNNRK|LL 0.085 . NF0021730 17 NRKLLSR|TL 0.078 . NF0021730 22 SRTLLSK|NV 0.066 . NF0021730 27 SKNVLLK|ST 0.085 . NF0021730 35 TASTTSR|KV 0.163 . NF0021730 36 ASTTSRK|VN 0.069 . NF0021730 64 FTSSSLR|SF 0.176 . NF0021730 74 TIHNFQR|NS 0.142 . NF0021730 96 NSDSGAK|TE 0.057 . NF0021730 101 AKTEEEK|SI 0.111 . NF0021730 108 SIEEILR|TK 0.082 . NF0021730 110 EEILRTK|TS 0.053 . NF0021730 124 IVNQLDR|YI 0.120 . NF0021730 133 VGQGDAK|RA 0.062 . NF0021730 134 GQGDAKR|AV 0.313 . NF0021730 141 AVAIALR|NR 0.066 . NF0021730 143 AIALRNR|WR 0.105 . NF0021730 145 ALRNRWR|RQ 0.077 . NF0021730 146 LRNRWRR|QQ 0.559 *ProP* NF0021730 154 QLDGSIR|DE 0.082 . NF0021730 160 RDEIIPK|NI 0.072 . NF0021730 172 GPTGVGK|TE 0.061 . NF0021730 177 GKTEIAR|RL 0.093 . NF0021730 178 KTEIARR|LS 0.103 . NF0021730 181 IARRLSK|LA 0.136 . NF0021730 189 AHAPFIK|TE 0.062 . NF0021730 194 IKTEATK|YT 0.091 . NF0021730 203 EVGFHGR|DV 0.280 . NF0021730 210 DVDTIIR|DL 0.095 . NF0021730 221 VGIQHTK|DR 0.059 . NF0021730 223 IQHTKDR|LR 0.107 . NF0021730 225 HTKDRLR|SA 0.159 . NF0021730 229 RLRSAYK|TK 0.073 . NF0021730 231 RSAYKTK|AH 0.086 . NF0021730 239 HELAEQK|II 0.061 . NF0021730 247 IETLTGK|KK 0.057 . NF0021730 248 ETLTGKK|KP 0.070 . NF0021730 249 TLTGKKK|PT 0.087 . NF0021730 258 PEDAAFR|DW 0.133 . NF0021730 261 AAFRDWR|EQ 0.161 . NF0021730 265 DWREQLR|NG 0.070 . NF0021730 272 NGILDDK|EI 0.068 . NF0021730 282 VELPIEK|PN 0.057 . NF0021730 289 PNAGMMR|GG 0.122 . NF0021730 296 GGAAMGR|GV 0.137 . NF0021730 319 FGASGGK|TR 0.053 . NF0021730 321 ASGGKTR|KR 0.094 . NF0021730 322 SGGKTRK|RR 0.080 . NF0021730 323 GGKTRKR|RM 0.145 . NF0021730 324 GKTRKRR|MK 0.497 . NF0021730 326 TRKRRMK|IK 0.201 . NF0021730 328 KRRMKIK|DC 0.115 . NF0021730 333 IKDCLPK|LE 0.061 . NF0021730 341 EESEVEK|LL 0.068 . NF0021730 350 QTDIVIK|EA 0.066 . NF0021730 354 VIKEAIR|SV 0.148 . NF0021730 369 FIDEIDK|IC 0.059 . NF0021730 375 KICSSFK|DG 0.075 . NF0021730 387 SSEGVQR|DL 0.134 . NF0021730 401 GTTISTK|YG 0.068 . NF0021730 406 TKYGNVK|TD 0.070 . NF0021730 422 GAFHSVK|PS 0.064 . NF0021730 433 LAELQGR|LP 0.078 . NF0021730 437 QGRLPIR|VE 0.098 . NF0021730 441 PIRVELK|GL 0.068 . NF0021730 446 LKGLTEK|DL 0.079 . NF0021730 450 TEKDLYR|VL 0.089 . NF0021730 461 PETNILR|QN 0.079 . NF0021730 468 QNIELLK|TE 0.060 . NF0021730 482 FSEDGVK|EI 0.059 . NF0021730 486 GVKEIAR|VA 0.119 . NF0021730 501 VENIGAR|RL 0.092 . NF0021730 502 ENIGARR|LI 0.149 . NF0021730 509 LITIVEK|IL 0.067 . NF0021730 522 FNAPTLK|GQ 0.069 . NF0021730 525 PTLKGQK|IV 0.064 . NF0021730 531 KIVITEK|EV 0.076 . NF0021730 542 HIGVLLK|RA 0.063 . NF0021730 543 IGVLLKR|AD 0.145 . NF0021730 547 LKRADLK|KF 0.064 . NF0021730 548 KRADLKK|FI 0.145 . ____________________________^_________________

Fasta :-
>NF0021730 ATGTTGATGAGCACTTGCTGTAATGGAAATAATAGAAAACTATTATCCCGTACACTTCTC TCAAAGAATGTTCTTTTAAAATCTACAGCCTCGACGACTTCAAGAAAAGTCAATCAATTT TATCCAATCATCATCACCACCAATACTACCACGAGTACTACCACTTTGAGTTTTACTTCA TCATCACTTCGCTCCTTTTCCACCATTCATAATTTCCAAAGAAATTCAAGTTTTGAAGAG GATGACTATAGTACGAACCCAATGAACAACTCGGACTCGGGAGCTAAAACAGAAGAAGAG AAATCCATAGAGGAAATTCTACGAACAAAAACCTCTCTTACTCCTAGCGAAATTGTGAAT CAATTGGATAGATATATTGTTGGACAAGGTGATGCTAAACGTGCAGTGGCCATTGCTTTG AGAAATCGTTGGAGAAGACAACAATTGGATGGATCCATCAGAGATGAGATTATTCCAAAG AATATTTTGATGATTGGACCTACAGGTGTTGGTAAAACTGAAATTGCAAGACGTTTAAGT AAATTGGCTCATGCTCCATTCATTAAAACAGAAGCCACTAAATACACCGAAGTTGGTTTT CATGGTCGTGATGTGGATACCATTATTAGAGATTTAGTAGATGTTGGTATTCAACACACC AAAGATCGATTGAGAAGTGCCTATAAAACCAAAGCTCATGAATTGGCTGAACAAAAGATT ATTGAAACATTAACTGGAAAGAAGAAACCAACACCAGAAGATGCAGCATTTAGAGATTGG AGAGAACAATTAAGAAATGGAATACTTGATGATAAAGAAATTGAAGTTGAACTTCCAATT GAAAAACCAAATGCAGGAATGATGAGAGGAGGTGCTGCCATGGGTCGAGGAGTACAAGGA ACTCCTATTGATATTCAAGATTTACTTTCTCCATTGTTTGGTGCAAGTGGTGGAAAAACA AGGAAACGTCGAATGAAGATTAAGGATTGTCTTCCAAAATTAGAAGAAAGTGAAGTTGAA AAATTATTACAGACAGATATTGTCATTAAGGAAGCCATTCGTTCAGTGGAGGAAGATGGA ATTGTTTTTATTGATGAAATTGATAAGATTTGTAGTTCATTTAAAGATGGACATGATGCT TCCTCTGAAGGTGTTCAACGTGATTTACTTCCAATTATTGAAGGAACCACCATTTCTACC AAATATGGAAATGTTAAAACCGATCATATTCTATTTATTGCTTGTGGTGCTTTCCACAGT GTAAAACCAAGTGATATGTTGGCAGAGTTACAAGGTAGATTACCCATTCGTGTTGAACTT AAGGGTTTGACTGAAAAAGATTTGTACAGAGTATTAACAGAACCTGAAACTAATATTTTA AGACAAAATATTGAATTGCTCAAAACGGAAGGAGTGGACATTGAGTTTAGTGAAGATGGT GTTAAAGAAATTGCTCGAGTTGCAGCTGAAGTGAATACCACAGTAGAGAATATTGGAGCT CGTCGACTCATTACCATTGTTGAGAAGATTTTGGAAGACATTTCCTTTAATGCTCCAACG TTGAAGGGACAAAAAATTGTCATTACAGAGAAGGAAGTGCAACAACATATTGGTGTCTTG TTGAAGAGAGCTGACCTCAAGAAGTTTATTTTGTAA
Download Fasta

Fasta :-

MLMSTCCNGNNRKLLSRTLLSKNVLLKSTASTTSRKVNQFYPIIITTNTTTSTTTLSFTS SSLRSFSTIHNFQRNSSFEEDDYSTNPMNNSDSGAKTEEEKSIEEILRTKTSLTPSEIVN QLDRYIVGQGDAKRAVAIALRNRWRRQQLDGSIRDEIIPKNILMIGPTGVGKTEIARRLS KLAHAPFIKTEATKYTEVGFHGRDVDTIIRDLVDVGIQHTKDRLRSAYKTKAHELAEQKI IETLTGKKKPTPEDAAFRDWREQLRNGILDDKEIEVELPIEKPNAGMMRGGAAMGRGVQG TPIDIQDLLSPLFGASGGKTRKRRMKIKDCLPKLEESEVEKLLQTDIVIKEAIRSVEEDG IVFIDEIDKICSSFKDGHDASSEGVQRDLLPIIEGTTISTKYGNVKTDHILFIACGAFHS VKPSDMLAELQGRLPIRVELKGLTEKDLYRVLTEPETNILRQNIELLKTEGVDIEFSEDG VKEIARVAAEVNTTVENIGARRLITIVEKILEDISFNAPTLKGQKIVITEKEVQQHIGVL LKRADLKKFIL

Extended AAA-ATPase domain

title: ATP binding site
coordinates: P167,T168,G169,V170,G171,K172,T173,E174

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NF0021730	102 S	EEEKSIEEI	0.997	unsp	NF0021730	102 S	EEEKSIEEI	0.997	unsp	NF0021730	102 S	EEEKSIEEI	0.997	unsp	NF0021730	152 S	QLDGSIRDE	0.992	unsp	NF0021730	180 S	ARRLSKLAH	0.994	unsp	NF0021730	226 S	DRLRSAYKT	0.994	unsp	NF0021730	355 S	EAIRSVEED	0.994	unsp	NF0021730	373 S	KICSSFKDG	0.995	unsp	NF0021730	77 S	QRNSSFEED	0.998	unsp	NF0021730	83 Y	EEDDYSTNP	0.993	unsp

NF0021730 | atp-dependent protease

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs: GO:0009376 GO:0005737

Computed_GO_Components: HslUV protease complex cytoplasm

Computed_GO_Function_IDs: GO:0005524 GO:0016887 GO:0070011

Computed_GO_Functions: ATP binding ATPase activity peptidase activity, acting on L-amino acid peptides

Computed_GO_Process_IDs:

Computed_GO_Processes:

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Extended AAA-ATPase domain

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India