• Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

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_ID
Prediction
OTHER
SP
mTP
CS_Position
NF0026960 mTP 0.402778 0.000327 0.596896 CS pos: 50-51. TTS-TT. Pr: 0.1501
Showing 1 to 1 of 1 rows
No Results
  • Fasta :-

    >NF0026960 MKGLSSSLRIYSKLRNCLQKMLKLVSSSSSFSGISFSRRGGILFHGTTTSTTNTPSMLKV VVMRTIADPPMMDRRRLLDFGINHQFSFFSRMNDLYHHDRKKMIYQSKSNRMMSSLNLMK GVSLDQPESSHHHHHHHLLLNSSYEHPLGGIIGSLYQASSNVLWNMKKQLFKSKFFKNSR TILIPHKLEMSWEELKRKISNVFGGHRYSYYEYSSYGSGGEGSGFRFTNIQKIIALNVAV FVLANLFLTRQDILANLGVSLDNIKHGKIYTMFTSMFTHIDLIHIFMNMYALSQLGKMMP MTRRLLWPAYIFCGLVASSVYLLDKWIGSTALHRPHEYYTTGIGASGAIFGLLAFVTQVH PFIPVGIFFLPIQFKLRNFFYGVIAIECYRWYTNRDSSVSASGHLGGALGGYLFYLMNRK RLLF
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0026960.fa Sequence name : NF0026960 Sequence length : 424 VALUES OF COMPUTED PARAMETERS Coef20 : 4.424 CoefTot : 0.473 ChDiff : 28 ZoneTo : 67 KR : 10 DE : 0 CleavSite : 74 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.976 2.359 0.348 0.774 MesoH : 0.685 0.893 -0.067 0.474 MuHd_075 : 29.184 19.719 7.752 7.021 MuHd_095 : 40.330 32.722 12.576 10.057 MuHd_100 : 48.498 35.695 14.746 11.889 MuHd_105 : 47.914 32.706 14.256 11.268 Hmax_075 : 15.100 15.100 2.614 4.630 Hmax_095 : 17.588 20.738 4.711 5.731 Hmax_100 : 19.500 24.500 5.503 6.730 Hmax_105 : 16.500 20.000 4.402 6.400 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0107 0.9893 DFMC : 0.0098 0.9902 This protein is probably imported in chloroplast. f(Ser) = 0.2090 f(Arg) = 0.0746 CMi = 1.19760 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 424 NF0026960 MKGLSSSLRIYSKLRNCLQKMLKLVSSSSSFSGISFSRRGGILFHGTTTSTTNTPSMLKVVVMRTIADPPMMDRRRLLDF 80 GINHQFSFFSRMNDLYHHDRKKMIYQSKSNRMMSSLNLMKGVSLDQPESSHHHHHHHLLLNSSYEHPLGGIIGSLYQASS 160 NVLWNMKKQLFKSKFFKNSRTILIPHKLEMSWEELKRKISNVFGGHRYSYYEYSSYGSGGEGSGFRFTNIQKIIALNVAV 240 FVLANLFLTRQDILANLGVSLDNIKHGKIYTMFTSMFTHIDLIHIFMNMYALSQLGKMMPMTRRLLWPAYIFCGLVASSV 320 YLLDKWIGSTALHRPHEYYTTGIGASGAIFGLLAFVTQVHPFIPVGIFFLPIQFKLRNFFYGVIAIECYRWYTNRDSSVS 400 ASGHLGGALGGYLFYLMNRKRLLF 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ........................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0026960 2 -----MK|GL 0.083 . NF0026960 9 GLSSSLR|IY 0.139 . NF0026960 13 SLRIYSK|LR 0.064 . NF0026960 15 RIYSKLR|NC 0.081 . NF0026960 20 LRNCLQK|ML 0.076 . NF0026960 23 CLQKMLK|LV 0.070 . NF0026960 38 SGISFSR|RG 0.097 . NF0026960 39 GISFSRR|GG 0.163 . NF0026960 59 NTPSMLK|VV 0.053 . NF0026960 64 LKVVVMR|TI 0.115 . NF0026960 74 DPPMMDR|RR 0.061 . NF0026960 75 PPMMDRR|RL 0.137 . NF0026960 76 PMMDRRR|LL 0.180 . NF0026960 91 QFSFFSR|MN 0.118 . NF0026960 100 DLYHHDR|KK 0.091 . NF0026960 101 LYHHDRK|KM 0.084 . NF0026960 102 YHHDRKK|MI 0.147 . NF0026960 108 KMIYQSK|SN 0.077 . NF0026960 111 YQSKSNR|MM 0.116 . NF0026960 120 SSLNLMK|GV 0.087 . NF0026960 167 NVLWNMK|KQ 0.052 . NF0026960 168 VLWNMKK|QL 0.102 . NF0026960 172 MKKQLFK|SK 0.081 . NF0026960 174 KQLFKSK|FF 0.074 . NF0026960 177 FKSKFFK|NS 0.090 . NF0026960 180 KFFKNSR|TI 0.070 . NF0026960 187 TILIPHK|LE 0.060 . NF0026960 196 MSWEELK|RK 0.058 . NF0026960 197 SWEELKR|KI 0.273 . NF0026960 198 WEELKRK|IS 0.086 . NF0026960 207 NVFGGHR|YS 0.077 . NF0026960 226 GEGSGFR|FT 0.097 . NF0026960 232 RFTNIQK|II 0.057 . NF0026960 250 ANLFLTR|QD 0.078 . NF0026960 265 VSLDNIK|HG 0.056 . NF0026960 268 DNIKHGK|IY 0.070 . NF0026960 297 ALSQLGK|MM 0.067 . NF0026960 303 KMMPMTR|RL 0.070 . NF0026960 304 MMPMTRR|LL 0.122 . NF0026960 325 SVYLLDK|WI 0.069 . NF0026960 334 GSTALHR|PH 0.091 . NF0026960 375 FLPIQFK|LR 0.056 . NF0026960 377 PIQFKLR|NF 0.104 . NF0026960 390 IAIECYR|WY 0.076 . NF0026960 395 YRWYTNR|DS 0.153 . NF0026960 419 LFYLMNR|KR 0.062 . NF0026960 420 FYLMNRK|RL 0.060 . NF0026960 421 YLMNRKR|LL 0.170 . ____________________________^_________________
  • Fasta :-

    >NF0026960 ATGAAAGGCCTTTCATCATCATTAAGAATTTATTCGAAATTGAGGAATTGCTTACAAAAA ATGTTGAAACTCGTTTCTTCTTCTTCTTCATTTAGTGGTATCAGCTTTTCGAGAAGAGGA GGAATTCTTTTTCATGGCACAACAACAAGCACCACTAACACTCCATCCATGTTGAAAGTG GTGGTGATGAGAACGATTGCTGATCCACCGATGATGGACCGTCGTCGGTTGTTGGATTTT GGAATTAATCATCAATTTTCATTCTTCTCTCGGATGAATGATCTTTATCATCATGATAGG AAGAAGATGATTTATCAATCAAAATCCAATAGGATGATGAGTTCGTTGAATTTGATGAAG GGAGTAAGCCTTGATCAACCCGAGTCAAGCCACCACCATCATCATCATCATCTTTTATTA AATTCTAGTTATGAACATCCTCTCGGAGGAATCATTGGTAGTCTCTATCAAGCCTCTTCA AATGTATTATGGAACATGAAAAAACAGTTATTCAAATCTAAATTCTTCAAGAATTCAAGA ACGATTCTAATACCACATAAACTTGAGATGAGTTGGGAAGAATTGAAAAGAAAGATTTCA AATGTATTTGGAGGTCATCGATATTCCTATTACGAATACAGTAGCTATGGAAGTGGAGGA GAAGGAAGTGGATTCCGATTTACGAATATTCAAAAAATCATTGCTTTGAATGTGGCTGTG TTTGTCTTGGCTAATTTATTCCTCACACGACAAGACATTCTTGCTAATTTGGGAGTTTCA TTGGACAATATCAAACATGGCAAAATTTACACCATGTTCACAAGCATGTTTACACATATT GATTTAATTCATATATTCATGAACATGTATGCATTGAGTCAATTAGGAAAAATGATGCCC ATGACTAGAAGATTATTGTGGCCAGCTTATATTTTCTGTGGTCTAGTGGCGTCTTCTGTT TATTTACTTGATAAATGGATTGGAAGTACTGCACTTCATCGACCCCATGAATACTATACC ACTGGTATTGGAGCCAGCGGAGCCATATTTGGTTTGTTAGCGTTTGTGACACAAGTACAT CCCTTCATTCCAGTAGGCATCTTCTTTTTACCCATCCAATTTAAATTAAGGAATTTCTTT TATGGTGTCATTGCCATTGAGTGCTATCGTTGGTACACGAACAGAGATTCATCCGTGAGT GCGAGTGGCCACTTGGGAGGAGCTTTGGGAGGATACTTGTTCTACCTGATGAATCGTAAG AGACTTCTTTTTTAA
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  • Fasta :-

    MKGLSSSLRIYSKLRNCLQKMLKLVSSSSSFSGISFSRRGGILFHGTTTSTTNTPSMLKV VVMRTIADPPMMDRRRLLDFGINHQFSFFSRMNDLYHHDRKKMIYQSKSNRMMSSLNLMK GVSLDQPESSHHHHHHHLLLNSSYEHPLGGIIGSLYQASSNVLWNMKKQLFKSKFFKNSR TILIPHKLEMSWEELKRKISNVFGGHRYSYYEYSSYGSGGEGSGFRFTNIQKIIALNVAV FVLANLFLTRQDILANLGVSLDNIKHGKIYTMFTSMFTHIDLIHIFMNMYALSQLGKMMP MTRRLLWPAYIFCGLVASSVYLLDKWIGSTALHRPHEYYTTGIGASGAIFGLLAFVTQVH PFIPVGIFFLPIQFKLRNFFYGVIAIECYRWYTNRDSSVSASGHLGGALGGYLFYLMNRK RLLF

    No Results
No Results
No Results
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ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
NF0026960 218 S SSYGSGGEG 0.991 unsp NF0026960 218 S SSYGSGGEG 0.991 unsp NF0026960 218 S SSYGSGGEG 0.991 unsp NF0026960 398 S NRDSSVSAS 0.997 unsp NF0026960 191 S KLEMSWEEL 0.995 unsp NF0026960 209 S GHRYSYYEY 0.995 unsp
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India