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_ID
Prediction
OTHER
SP
mTP
CS_Position
NF0044390 OTHER 0.671507 0.000339 0.328154
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No Results
  • Fasta :-

    >NF0044390 MKSLLKASHACLHHHSLMGTLRSRTSSRGGSSHSCIIQLLDASLTSSNHHVGRFGHSTMS YFRSFSTIVNRTQKSSSSTTGKKGSNFSDNSDDDGEDIFDKLKKLGFLGQGSPEVKKHLE NMMDFMLKPGKSMPTSSSSSTMTPESSEAKKEEKPKPLNTFLEDEEKLIESFNRVVFEAY KLHRNSFESQLTPEEIVNSLDKHIVGQRDAKRAVAIALRNRFRRKTLIEWYNDKSRPKTT LDPSEIIPKNILMIGPTGCGKTEIARRISKLVSAPFLKVEATKYTELGYHGRDVDTIARD LIDVSINLLKNNLSELFKGYLNAPLKNEEADPGAVLFHSYLQQLIENRLIHLMFGSESIE KIRESTLRDYLNMLRNGELDDRHVEIEVPVASSKRGSGMSALSDLFDAVKNNFTPQNSKF TIPDIAELSNHQTPFDTMLIESPTPTAFKKVKLTVKEAKVKLAELELEKLINNPIFIEEA KRIAEREGIVFIDEIDKICGDPNQKRGSADASGEGVQKDLLPLLEGCEIQTKYGTFKTDH VLFIASGAFHDKKPSDLMSELQGRLPVRVTLGSLNTKEELYQVLTIPEFNLIRQHVSLFE TEGVRLNITDEAIEEIATFSAICNSSVDNLGTRRLIGIIDKCLEELSFIIPDLVKSDSTT IESEFNKVGLQDCYQIIPSNEGTSQKQLLEITINAQFVKKKIESSPLFAKMDVRKFTI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0044390.fa Sequence name : NF0044390 Sequence length : 718 VALUES OF COMPUTED PARAMETERS Coef20 : 3.795 CoefTot : -0.661 ChDiff : -5 ZoneTo : 88 KR : 11 DE : 1 CleavSite : 73 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.441 1.294 -0.035 0.490 MesoH : -0.585 0.342 -0.421 0.161 MuHd_075 : 34.167 21.160 10.901 7.058 MuHd_095 : 37.527 25.567 9.937 8.758 MuHd_100 : 39.186 23.696 9.974 9.432 MuHd_105 : 40.618 25.388 11.300 10.565 Hmax_075 : 11.783 17.383 3.876 3.395 Hmax_095 : 12.425 18.500 3.323 4.930 Hmax_100 : 16.100 15.100 1.960 6.310 Hmax_105 : 18.200 15.400 2.114 6.218 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0607 0.9393 DFMC : 0.0310 0.9690 This protein is probably imported in chloroplast. f(Ser) = 0.2500 f(Arg) = 0.0682 CMi = 1.51099 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 718 NF0044390 MKSLLKASHACLHHHSLMGTLRSRTSSRGGSSHSCIIQLLDASLTSSNHHVGRFGHSTMSYFRSFSTIVNRTQKSSSSTT 80 GKKGSNFSDNSDDDGEDIFDKLKKLGFLGQGSPEVKKHLENMMDFMLKPGKSMPTSSSSSTMTPESSEAKKEEKPKPLNT 160 FLEDEEKLIESFNRVVFEAYKLHRNSFESQLTPEEIVNSLDKHIVGQRDAKRAVAIALRNRFRRKTLIEWYNDKSRPKTT 240 LDPSEIIPKNILMIGPTGCGKTEIARRISKLVSAPFLKVEATKYTELGYHGRDVDTIARDLIDVSINLLKNNLSELFKGY 320 LNAPLKNEEADPGAVLFHSYLQQLIENRLIHLMFGSESIEKIRESTLRDYLNMLRNGELDDRHVEIEVPVASSKRGSGMS 400 ALSDLFDAVKNNFTPQNSKFTIPDIAELSNHQTPFDTMLIESPTPTAFKKVKLTVKEAKVKLAELELEKLINNPIFIEEA 480 KRIAEREGIVFIDEIDKICGDPNQKRGSADASGEGVQKDLLPLLEGCEIQTKYGTFKTDHVLFIASGAFHDKKPSDLMSE 560 LQGRLPVRVTLGSLNTKEELYQVLTIPEFNLIRQHVSLFETEGVRLNITDEAIEEIATFSAICNSSVDNLGTRRLIGIID 640 KCLEELSFIIPDLVKSDSTTIESEFNKVGLQDCYQIIPSNEGTSQKQLLEITINAQFVKKKIESSPLFAKMDVRKFTI 720 ................................................................................ 80 ................................................................................ 160 ...............................................................P................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .............................................................................. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ NF0044390 2 -----MK|SL 0.085 . NF0044390 6 -MKSLLK|AS 0.069 . NF0044390 22 SLMGTLR|SR 0.136 . NF0044390 24 MGTLRSR|TS 0.095 . NF0044390 28 RSRTSSR|GG 0.114 . NF0044390 53 SNHHVGR|FG 0.146 . NF0044390 63 STMSYFR|SF 0.165 . NF0044390 71 FSTIVNR|TQ 0.075 . NF0044390 74 IVNRTQK|SS 0.232 . NF0044390 82 SSSTTGK|KG 0.074 . NF0044390 83 SSTTGKK|GS 0.090 . NF0044390 101 GEDIFDK|LK 0.059 . NF0044390 103 DIFDKLK|KL 0.066 . NF0044390 104 IFDKLKK|LG 0.097 . NF0044390 116 QGSPEVK|KH 0.065 . NF0044390 117 GSPEVKK|HL 0.136 . NF0044390 128 MMDFMLK|PG 0.060 . NF0044390 131 FMLKPGK|SM 0.070 . NF0044390 150 PESSEAK|KE 0.066 . NF0044390 151 ESSEAKK|EE 0.116 . NF0044390 154 EAKKEEK|PK 0.057 . NF0044390 156 KKEEKPK|PL 0.087 . NF0044390 167 FLEDEEK|LI 0.062 . NF0044390 174 LIESFNR|VV 0.124 . NF0044390 181 VVFEAYK|LH 0.056 . NF0044390 184 EAYKLHR|NS 0.103 . NF0044390 202 IVNSLDK|HI 0.072 . NF0044390 208 KHIVGQR|DA 0.115 . NF0044390 211 VGQRDAK|RA 0.131 . NF0044390 212 GQRDAKR|AV 0.340 . NF0044390 219 AVAIALR|NR 0.066 . NF0044390 221 AIALRNR|FR 0.090 . NF0044390 223 ALRNRFR|RK 0.092 . NF0044390 224 LRNRFRR|KT 0.581 *ProP* NF0044390 225 RNRFRRK|TL 0.100 . NF0044390 234 IEWYNDK|SR 0.065 . NF0044390 236 WYNDKSR|PK 0.098 . NF0044390 238 NDKSRPK|TT 0.058 . NF0044390 249 PSEIIPK|NI 0.071 . NF0044390 261 GPTGCGK|TE 0.058 . NF0044390 266 GKTEIAR|RI 0.098 . NF0044390 267 KTEIARR|IS 0.097 . NF0044390 270 IARRISK|LV 0.181 . NF0044390 278 VSAPFLK|VE 0.058 . NF0044390 283 LKVEATK|YT 0.085 . NF0044390 292 ELGYHGR|DV 0.278 . NF0044390 299 DVDTIAR|DL 0.095 . NF0044390 310 VSINLLK|NN 0.058 . NF0044390 318 NLSELFK|GY 0.065 . NF0044390 326 YLNAPLK|NE 0.066 . NF0044390 348 QQLIENR|LI 0.085 . NF0044390 361 GSESIEK|IR 0.059 . NF0044390 363 ESIEKIR|ES 0.071 . NF0044390 368 IRESTLR|DY 0.127 . NF0044390 375 DYLNMLR|NG 0.064 . NF0044390 382 NGELDDR|HV 0.111 . NF0044390 394 VPVASSK|RG 0.061 . NF0044390 395 PVASSKR|GS 0.302 . NF0044390 410 DLFDAVK|NN 0.060 . NF0044390 419 FTPQNSK|FT 0.063 . NF0044390 449 PTPTAFK|KV 0.061 . NF0044390 450 TPTAFKK|VK 0.103 . NF0044390 452 TAFKKVK|LT 0.074 . NF0044390 456 KVKLTVK|EA 0.067 . NF0044390 459 LTVKEAK|VK 0.068 . NF0044390 461 VKEAKVK|LA 0.073 . NF0044390 469 AELELEK|LI 0.055 . NF0044390 481 IFIEEAK|RI 0.066 . NF0044390 482 FIEEAKR|IA 0.198 . NF0044390 486 AKRIAER|EG 0.090 . NF0044390 497 FIDEIDK|IC 0.057 . NF0044390 505 CGDPNQK|RG 0.054 . NF0044390 506 GDPNQKR|GS 0.201 . NF0044390 518 SGEGVQK|DL 0.073 . NF0044390 532 GCEIQTK|YG 0.065 . NF0044390 537 TKYGTFK|TD 0.070 . NF0044390 552 SGAFHDK|KP 0.073 . NF0044390 553 GAFHDKK|PS 0.090 . NF0044390 564 MSELQGR|LP 0.078 . NF0044390 568 QGRLPVR|VT 0.106 . NF0044390 577 LGSLNTK|EE 0.061 . NF0044390 593 PEFNLIR|QH 0.074 . NF0044390 605 FETEGVR|LN 0.068 . NF0044390 633 VDNLGTR|RL 0.084 . NF0044390 634 DNLGTRR|LI 0.134 . NF0044390 641 LIGIIDK|CL 0.062 . NF0044390 655 IIPDLVK|SD 0.076 . NF0044390 667 IESEFNK|VG 0.060 . NF0044390 686 NEGTSQK|QL 0.065 . NF0044390 699 INAQFVK|KK 0.068 . NF0044390 700 NAQFVKK|KI 0.121 . NF0044390 701 AQFVKKK|IE 0.119 . NF0044390 710 SSPLFAK|MD 0.066 . NF0044390 714 FAKMDVR|KF 0.089 . NF0044390 715 AKMDVRK|FT 0.123 . ____________________________^_________________
  • Fasta :-

    >NF0044390 ATGAAATCGCTGTTGAAAGCCTCTCACGCGTGCTTGCATCATCATTCTTTGATGGGAACA CTTCGTTCAAGAACTTCTTCGCGAGGAGGTTCCTCTCATTCCTGCATCATTCAATTACTT GATGCATCGTTAACGTCGAGTAATCATCATGTTGGAAGATTCGGGCACTCAACAATGTCA TATTTCCGATCCTTTTCAACCATCGTGAATCGGACTCAAAAATCTTCATCATCTACAACG GGAAAGAAAGGAAGTAATTTTAGTGATAACAGTGATGACGATGGAGAAGATATATTTGAT AAATTAAAGAAGCTCGGGTTTTTAGGACAAGGCTCTCCCGAAGTGAAAAAACATTTGGAA AATATGATGGATTTCATGCTCAAGCCTGGAAAATCTATGCCAACATCTTCATCTTCGTCG ACAATGACACCCGAAAGCTCTGAAGCCAAGAAAGAGGAAAAACCGAAACCTCTCAATACA TTCCTGGAGGATGAAGAAAAATTAATAGAGAGTTTTAATAGAGTTGTTTTTGAAGCTTAT AAATTACATAGAAACAGTTTTGAATCTCAATTAACACCAGAGGAAATTGTGAATAGTTTG GATAAACATATAGTTGGACAAAGGGATGCAAAGAGAGCGGTTGCGATTGCTCTCCGAAAT AGGTTTAGAAGAAAGACTCTTATTGAATGGTACAATGACAAGAGTAGACCAAAAACAACT TTGGATCCCAGTGAAATTATTCCAAAGAACATTTTAATGATTGGCCCAACAGGTTGCGGA AAAACAGAAATTGCACGTCGAATTTCTAAGCTTGTTTCAGCTCCTTTTTTAAAAGTAGAA GCCACAAAATATACTGAGCTTGGTTATCACGGTAGAGATGTGGATACAATTGCTCGTGAT TTAATTGATGTTTCTATTAACTTGTTGAAAAATAATCTCTCTGAGTTGTTTAAAGGTTAT TTAAATGCTCCATTAAAGAATGAGGAGGCAGATCCTGGAGCTGTACTGTTTCATTCCTAC TTGCAACAATTAATTGAAAATAGATTGATTCATCTAATGTTCGGTTCTGAAAGCATTGAA AAAATAAGAGAATCTACACTCAGAGACTATTTGAACATGTTGAGAAATGGAGAGTTGGAT GATCGTCATGTTGAAATTGAAGTTCCAGTTGCGTCGTCCAAAAGAGGCTCTGGAATGTCT GCCCTGAGCGATCTATTTGATGCTGTTAAGAATAATTTTACACCTCAAAATTCCAAATTT ACAATACCAGATATTGCAGAATTAAGCAATCATCAAACACCATTTGATACCATGCTCATC GAGTCACCAACTCCTACTGCTTTCAAAAAAGTAAAACTGACCGTCAAAGAGGCCAAGGTA AAGCTTGCTGAGCTTGAGTTAGAAAAATTGATAAATAACCCAATATTCATTGAGGAAGCG AAAAGAATTGCCGAAAGAGAGGGAATTGTTTTCATTGACGAAATTGACAAAATTTGTGGT GATCCCAACCAAAAGAGAGGCTCAGCAGATGCATCTGGTGAAGGTGTTCAAAAGGACTTG CTGCCGCTTCTCGAAGGTTGTGAAATTCAAACCAAATACGGAACCTTTAAGACAGACCAT GTATTATTTATTGCAAGTGGAGCATTTCACGATAAAAAACCTTCAGATCTCATGTCTGAA TTGCAAGGAAGATTACCAGTGAGAGTTACCTTAGGCTCACTCAATACAAAAGAAGAGTTG TATCAAGTGTTGACAATTCCAGAATTTAATTTAATACGCCAACATGTGTCACTATTTGAA ACGGAAGGAGTTAGACTGAATATCACCGATGAAGCGATCGAGGAAATTGCTACATTCTCA GCAATATGCAACTCTAGTGTGGATAATCTAGGCACTCGTAGACTCATTGGTATCATTGAC AAGTGCCTGGAAGAACTCTCCTTTATTATACCTGACCTTGTGAAATCTGACTCAACTACA ATAGAGAGTGAATTCAACAAGGTTGGACTACAGGATTGCTATCAGATTATTCCATCAAAT GAAGGAACGAGCCAAAAGCAGCTGTTGGAAATCACGATCAATGCACAATTTGTCAAGAAA AAGATCGAATCGAGTCCATTATTCGCAAAAATGGATGTACGAAAGTTTACCATCTAA
  • Download Fasta
  • Fasta :-

    MKSLLKASHACLHHHSLMGTLRSRTSSRGGSSHSCIIQLLDASLTSSNHHVGRFGHSTMS YFRSFSTIVNRTQKSSSSTTGKKGSNFSDNSDDDGEDIFDKLKKLGFLGQGSPEVKKHLE NMMDFMLKPGKSMPTSSSSSTMTPESSEAKKEEKPKPLNTFLEDEEKLIESFNRVVFEAY KLHRNSFESQLTPEEIVNSLDKHIVGQRDAKRAVAIALRNRFRRKTLIEWYNDKSRPKTT LDPSEIIPKNILMIGPTGCGKTEIARRISKLVSAPFLKVEATKYTELGYHGRDVDTIARD LIDVSINLLKNNLSELFKGYLNAPLKNEEADPGAVLFHSYLQQLIENRLIHLMFGSESIE KIRESTLRDYLNMLRNGELDDRHVEIEVPVASSKRGSGMSALSDLFDAVKNNFTPQNSKF TIPDIAELSNHQTPFDTMLIESPTPTAFKKVKLTVKEAKVKLAELELEKLINNPIFIEEA KRIAEREGIVFIDEIDKICGDPNQKRGSADASGEGVQKDLLPLLEGCEIQTKYGTFKTDH VLFIASGAFHDKKPSDLMSELQGRLPVRVTLGSLNTKEELYQVLTIPEFNLIRQHVSLFE TEGVRLNITDEAIEEIATFSAICNSSVDNLGTRRLIGIIDKCLEELSFIIPDLVKSDSTT IESEFNKVGLQDCYQIIPSNEGTSQKQLLEITINAQFVKKKIESSPLFAKMDVRKFTI

  • title: ATP binding site
  • coordinates: P256,T257,G258,C259,G260,K261,T262,E263
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ID
Site
Position
Gscore
Iscore
ID
Site
Position
Gscore
Iscore
NF0044390 T 143 0.604 0.085 NF0044390 T 141 0.557 0.178
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ID
Site
Position
Gscore
Iscore
ID
Site
Position
Gscore
Iscore
NF0044390 T 143 0.604 0.085 NF0044390 T 141 0.557 0.178
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ID
Site
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Score
Method
ID
Site
Peptide
Score
Method
ID
Site
Peptide
Score
Method
NF0044390 77 S QKSSSSTTG 0.992 unsp NF0044390 77 S QKSSSSTTG 0.992 unsp NF0044390 77 S QKSSSSTTG 0.992 unsp NF0044390 146 S MTPESSEAK 0.992 unsp NF0044390 186 S LHRNSFESQ 0.995 unsp NF0044390 366 T IRESTLRDY 0.993 unsp NF0044390 397 S SKRGSGMSA 0.994 unsp NF0044390 684 S NEGTSQKQL 0.992 unsp NF0044390 26 S RSRTSSRGG 0.996 unsp NF0044390 27 S SRTSSRGGS 0.995 unsp
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India