NF0049560 | proteasome subunit alpha type-3 isoform x1

_IDPredictionOTHERSPmTPCS_Position
NF0049560OTHER0.9999210.0000670.000012
No Results

  • Fasta :-

    >NF0049560 MSGMGTGYDLAVTTYSPDGRLYQIEYANKAVESSGTAIGICCKDGVVLAVEKLVDSKLQE EHTNTRIFNVDRTAGLSITGWKPDGRPIVNKARSEARGYLDQFGHRIPGRVLSERLSASV HFHTLYMSSRPLGITTLLAAYDRIDGYQLYQIEPSGESWGYRACATGKGRQAAKSELEKL NLDTLTINDALKEAARITYHVHDDTKDRPMELELSWISADTNNEHRKITGELYEQLNQYA KDQTKKTGTGSQTGTSGTEMQEDEDLSSENK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0049560.fa Sequence name : NF0049560 Sequence length : 271 VALUES OF COMPUTED PARAMETERS Coef20 : 3.300 CoefTot : -0.795 ChDiff : -7 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.794 1.447 0.227 0.461 MesoH : -1.078 -0.101 -0.474 0.072 MuHd_075 : 19.932 9.735 4.756 2.450 MuHd_095 : 7.998 7.206 2.104 2.359 MuHd_100 : 1.800 5.087 0.305 1.958 MuHd_105 : 9.454 3.821 1.901 1.932 Hmax_075 : 10.850 5.950 0.836 3.558 Hmax_095 : 10.200 6.400 0.672 3.840 Hmax_100 : 10.600 6.800 0.648 4.000 Hmax_105 : 10.800 4.400 0.812 3.390 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9895 0.0105 DFMC : 0.9913 0.0087
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 271 NF0049560 MSGMGTGYDLAVTTYSPDGRLYQIEYANKAVESSGTAIGICCKDGVVLAVEKLVDSKLQEEHTNTRIFNVDRTAGLSITG 80 WKPDGRPIVNKARSEARGYLDQFGHRIPGRVLSERLSASVHFHTLYMSSRPLGITTLLAAYDRIDGYQLYQIEPSGESWG 160 YRACATGKGRQAAKSELEKLNLDTLTINDALKEAARITYHVHDDTKDRPMELELSWISADTNNEHRKITGELYEQLNQYA 240 KDQTKKTGTGSQTGTSGTEMQEDEDLSSENK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0049560 20 TYSPDGR|LY 0.096 . NF0049560 29 QIEYANK|AV 0.085 . NF0049560 43 AIGICCK|DG 0.058 . NF0049560 52 VVLAVEK|LV 0.069 . NF0049560 57 EKLVDSK|LQ 0.060 . NF0049560 66 EEHTNTR|IF 0.082 . NF0049560 72 RIFNVDR|TA 0.124 . NF0049560 82 LSITGWK|PD 0.065 . NF0049560 86 GWKPDGR|PI 0.096 . NF0049560 91 GRPIVNK|AR 0.087 . NF0049560 93 PIVNKAR|SE 0.128 . NF0049560 97 KARSEAR|GY 0.142 . NF0049560 106 LDQFGHR|IP 0.100 . NF0049560 110 GHRIPGR|VL 0.122 . NF0049560 115 GRVLSER|LS 0.099 . NF0049560 130 TLYMSSR|PL 0.112 . NF0049560 143 LLAAYDR|ID 0.109 . NF0049560 162 GESWGYR|AC 0.130 . NF0049560 168 RACATGK|GR 0.068 . NF0049560 170 CATGKGR|QA 0.122 . NF0049560 174 KGRQAAK|SE 0.083 . NF0049560 179 AKSELEK|LN 0.065 . NF0049560 192 TINDALK|EA 0.073 . NF0049560 196 ALKEAAR|IT 0.101 . NF0049560 206 HVHDDTK|DR 0.067 . NF0049560 208 HDDTKDR|PM 0.103 . NF0049560 226 DTNNEHR|KI 0.102 . NF0049560 227 TNNEHRK|IT 0.155 . NF0049560 241 QLNQYAK|DQ 0.086 . NF0049560 245 YAKDQTK|KT 0.083 . NF0049560 246 AKDQTKK|TG 0.103 . NF0049560 271 DLSSENK|-- 0.067 . ____________________________^_________________

  • Fasta :-

    >NF0049560 ATGTCTGGCATGGGTACTGGCTATGATTTGGCCGTAACCACTTACTCTCCTGATGGTCGT CTCTATCAAATTGAATATGCCAACAAGGCTGTTGAATCAAGCGGAACAGCCATCGGTATT TGCTGTAAAGATGGAGTTGTTCTAGCTGTTGAAAAATTGGTGGATTCCAAGCTTCAAGAA GAACACACCAATACTCGAATTTTCAACGTTGATAGAACAGCTGGATTGAGCATTACTGGA TGGAAGCCTGATGGAAGACCAATTGTAAATAAAGCCAGATCCGAAGCTAGAGGATACTTG GATCAATTCGGACATCGTATTCCAGGACGAGTACTCTCTGAAAGATTAAGTGCAAGCGTT CATTTTCATACATTGTACATGTCAAGCAGACCACTTGGAATTACAACATTATTAGCAGCT TATGATCGTATTGATGGTTATCAATTATATCAAATTGAACCAAGTGGAGAGAGTTGGGGA TATAGGGCTTGTGCCACTGGAAAGGGAAGACAAGCAGCCAAATCAGAACTTGAAAAGTTG AATTTAGATACACTTACAATTAATGATGCTCTCAAGGAAGCAGCTCGTATCACTTATCAT GTTCATGATGACACGAAGGATCGACCAATGGAGTTAGAGTTGAGTTGGATCAGTGCCGAT ACTAACAATGAGCATCGTAAAATTACTGGAGAATTGTATGAACAATTGAATCAATATGCA AAGGATCAAACTAAAAAGACAGGAACTGGTTCACAAACTGGTACTTCAGGAACTGAAATG CAAGAGGATGAAGATTTGTCTTCTGAAAACAAGTAA
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  • Fasta :-

    MSGMGTGYDLAVTTYSPDGRLYQIEYANKAVESSGTAIGICCKDGVVLAVEKLVDSKLQE EHTNTRIFNVDRTAGLSITGWKPDGRPIVNKARSEARGYLDQFGHRIPGRVLSERLSASV HFHTLYMSSRPLGITTLLAAYDRIDGYQLYQIEPSGESWGYRACATGKGRQAAKSELEKL NLDTLTINDALKEAARITYHVHDDTKDRPMELELSWISADTNNEHRKITGELYEQLNQYA KDQTKKTGTGSQTGTSGTEMQEDEDLSSENK

  • title: active site
  • coordinates: G35,E51,L53,R66,K168
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India