NF0052240 | embryonic stem cell-specific 5-hydroxymethylcytosine-binding

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_IDPredictionOTHERSPmTPCS_Position
NF0052240OTHER0.8785590.0011170.120325
No Results

  • Fasta :-

    >NF0052240 MCGRSALSLAPPQFRNVASRQLGADMHQTVWIGQALFKPLYNFSMGGCLPIIYYDPTICD DDAEKLKISEASDSVKLTTIMIKQENDQETSIKKEIKQEIKSEIKEEPKVKKEEELSLAL PKIHGLHLRTMTWGLTSYTSDHHQLNSVKTLNARAETLQEKPTFKRLLKNQRAILFVEGF YEWKSAPLNTGKKQPYYIHPKEKGTLMCFACLYDKQEPNATDGYNFTVITVEADEKFAHI HDRMPAILTSASDIRKWLGIDPTDDVLSLLKTCDFSQHLSMYEVSDFVNSATNQSAKCIK PLKEIQHGKGSLHLYFKPAAPKRVKDEMESSCSSRINGGDIPQSNIKEEEPETKKIKKEE QQV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0052240.fa Sequence name : NF0052240 Sequence length : 363 VALUES OF COMPUTED PARAMETERS Coef20 : 4.530 CoefTot : -1.921 ChDiff : 0 ZoneTo : 54 KR : 4 DE : 1 CleavSite : 30 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.941 0.994 0.227 0.496 MesoH : -0.843 0.059 -0.431 0.152 MuHd_075 : 40.452 20.869 9.605 8.820 MuHd_095 : 36.175 24.598 10.495 9.439 MuHd_100 : 30.921 24.780 11.233 7.730 MuHd_105 : 31.341 24.501 10.523 6.785 Hmax_075 : 12.900 10.800 0.677 5.270 Hmax_095 : 14.900 15.800 4.070 5.740 Hmax_100 : 18.600 15.700 2.857 5.740 Hmax_105 : 19.017 12.338 2.835 5.241 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0593 0.9407 DFMC : 0.1318 0.8682 This protein is probably imported in mitochondria. f(Ser) = 0.0741 f(Arg) = 0.0556 CMi = 0.50125 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 363 NF0052240 MCGRSALSLAPPQFRNVASRQLGADMHQTVWIGQALFKPLYNFSMGGCLPIIYYDPTICDDDAEKLKISEASDSVKLTTI 80 MIKQENDQETSIKKEIKQEIKSEIKEEPKVKKEEELSLALPKIHGLHLRTMTWGLTSYTSDHHQLNSVKTLNARAETLQE 160 KPTFKRLLKNQRAILFVEGFYEWKSAPLNTGKKQPYYIHPKEKGTLMCFACLYDKQEPNATDGYNFTVITVEADEKFAHI 240 HDRMPAILTSASDIRKWLGIDPTDDVLSLLKTCDFSQHLSMYEVSDFVNSATNQSAKCIKPLKEIQHGKGSLHLYFKPAA 320 PKRVKDEMESSCSSRINGGDIPQSNIKEEEPETKKIKKEEQQV 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ........................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0052240 4 ---MCGR|SA 0.111 . NF0052240 15 LAPPQFR|NV 0.101 . NF0052240 20 FRNVASR|QL 0.205 . NF0052240 38 IGQALFK|PL 0.065 . NF0052240 65 CDDDAEK|LK 0.055 . NF0052240 67 DDAEKLK|IS 0.071 . NF0052240 76 EASDSVK|LT 0.083 . NF0052240 83 LTTIMIK|QE 0.071 . NF0052240 93 DQETSIK|KE 0.065 . NF0052240 94 QETSIKK|EI 0.112 . NF0052240 97 SIKKEIK|QE 0.075 . NF0052240 101 EIKQEIK|SE 0.081 . NF0052240 105 EIKSEIK|EE 0.056 . NF0052240 109 EIKEEPK|VK 0.060 . NF0052240 111 KEEPKVK|KE 0.061 . NF0052240 112 EEPKVKK|EE 0.100 . NF0052240 122 LSLALPK|IH 0.076 . NF0052240 129 IHGLHLR|TM 0.119 . NF0052240 149 HQLNSVK|TL 0.063 . NF0052240 154 VKTLNAR|AE 0.084 . NF0052240 161 AETLQEK|PT 0.062 . NF0052240 165 QEKPTFK|RL 0.063 . NF0052240 166 EKPTFKR|LL 0.172 . NF0052240 169 TFKRLLK|NQ 0.147 . NF0052240 172 RLLKNQR|AI 0.095 . NF0052240 184 EGFYEWK|SA 0.071 . NF0052240 192 APLNTGK|KQ 0.059 . NF0052240 193 PLNTGKK|QP 0.088 . NF0052240 201 PYYIHPK|EK 0.069 . NF0052240 203 YIHPKEK|GT 0.080 . NF0052240 215 FACLYDK|QE 0.056 . NF0052240 236 TVEADEK|FA 0.077 . NF0052240 243 FAHIHDR|MP 0.106 . NF0052240 255 TSASDIR|KW 0.109 . NF0052240 256 SASDIRK|WL 0.117 . NF0052240 271 DVLSLLK|TC 0.054 . NF0052240 297 ATNQSAK|CI 0.077 . NF0052240 300 QSAKCIK|PL 0.083 . NF0052240 303 KCIKPLK|EI 0.070 . NF0052240 309 KEIQHGK|GS 0.066 . NF0052240 317 SLHLYFK|PA 0.073 . NF0052240 322 FKPAAPK|RV 0.075 . NF0052240 323 KPAAPKR|VK 0.345 . NF0052240 325 AAPKRVK|DE 0.064 . NF0052240 335 ESSCSSR|IN 0.166 . NF0052240 347 IPQSNIK|EE 0.067 . NF0052240 354 EEEPETK|KI 0.077 . NF0052240 355 EEPETKK|IK 0.076 . NF0052240 357 PETKKIK|KE 0.071 . NF0052240 358 ETKKIKK|EE 0.109 . ____________________________^_________________

  • Fasta :-

    >NF0052240 ATGTGTGGACGAAGCGCTCTCTCTCTTGCTCCTCCTCAATTCAGAAATGTGGCCAGCAGA CAACTAGGAGCGGATATGCATCAGACTGTGTGGATCGGACAGGCTCTTTTCAAGCCTCTG TACAATTTCAGCATGGGAGGATGTTTGCCAATTATTTATTATGATCCAACTATTTGCGAT GATGATGCTGAAAAATTGAAAATTTCGGAGGCTTCAGACTCTGTAAAGTTGACCACCATC ATGATTAAACAAGAAAATGATCAAGAAACTTCCATAAAAAAGGAAATTAAACAAGAAATT AAATCCGAAATTAAAGAAGAACCAAAAGTCAAGAAAGAAGAAGAGCTTTCACTCGCTCTG CCAAAGATTCATGGACTTCATCTTCGCACCATGACTTGGGGGCTAACCTCCTACACAAGT GACCATCATCAACTTAACTCTGTAAAAACTTTAAATGCTCGAGCAGAGACATTGCAAGAG AAACCAACATTCAAGAGATTGTTGAAAAATCAAAGAGCTATTCTATTTGTGGAAGGATTT TATGAATGGAAGAGCGCACCACTCAACACAGGAAAAAAACAACCATACTATATTCACCCT AAAGAAAAAGGCACTCTTATGTGTTTTGCATGTCTTTATGACAAACAGGAACCAAATGCA ACCGATGGGTATAATTTCACTGTTATAACTGTAGAGGCTGATGAAAAATTTGCTCATATT CATGACAGAATGCCTGCAATTCTTACGAGCGCATCCGACATTAGAAAATGGTTAGGCATT GATCCCACAGATGACGTCTTGTCACTTTTGAAAACTTGTGATTTTTCTCAACATTTAAGC ATGTACGAAGTTTCAGATTTTGTAAATAGTGCAACAAATCAGTCTGCCAAATGCATCAAA CCTCTTAAGGAAATTCAACACGGAAAAGGATCCTTACATTTATATTTCAAGCCAGCTGCT CCCAAGCGTGTGAAAGATGAGATGGAAAGCAGCTGCTCATCACGAATCAATGGTGGAGAC ATTCCACAAAGCAACATTAAGGAGGAAGAACCTGAGACAAAAAAGATTAAAAAAGAAGAG CAACAAGTATAG
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  • Fasta :-

    MCGRSALSLAPPQFRNVASRQLGADMHQTVWIGQALFKPLYNFSMGGCLPIIYYDPTICD DDAEKLKISEASDSVKLTTIMIKQENDQETSIKKEIKQEIKSEIKEEPKVKKEEELSLAL PKIHGLHLRTMTWGLTSYTSDHHQLNSVKTLNARAETLQEKPTFKRLLKNQRAILFVEGF YEWKSAPLNTGKKQPYYIHPKEKGTLMCFACLYDKQEPNATDGYNFTVITVEADEKFAHI HDRMPAILTSASDIRKWLGIDPTDDVLSLLKTCDFSQHLSMYEVSDFVNSATNQSAKCIK PLKEIQHGKGSLHLYFKPAAPKRVKDEMESSCSSRINGGDIPQSNIKEEEPETKKIKKEE QQV

    No Results
No Results
No Results
IDSitePeptideScoreMethod
NF005224074 SEASDSVKLT0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India