NF0056430 | cathepsin b

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008234      

  • Computed_GO_Functions:  cysteine-type peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
NF0056430OTHER0.5226960.4733540.003950
No Results

  • Fasta :-

    >NF0056430 MLPKKTIAPLVGAPAAFDSRTKWPNCVHPIRNQEQCGSCWAFSASEVLSDRFCIASTGKD NVVLSPQYMVSCDTSDYGCDGGYLNNAWNFLATTGIPTDSCVPYTSQNGDVAACPSTCQN GGSIKLYRAKNPQQLNDIPSIMADMEANGPVQAAFSVYRDFMSYKSGVYHHVSGSLLGGH AIKIVGWGVDSVSNKPYWIVANSWGPSWGLNGFFWILRGSDECGIEDNVWGAGVLL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0056430.fa Sequence name : NF0056430 Sequence length : 236 VALUES OF COMPUTED PARAMETERS Coef20 : 3.870 CoefTot : -1.564 ChDiff : -4 ZoneTo : 33 KR : 5 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.047 1.006 0.048 0.516 MesoH : 0.009 0.229 -0.236 0.323 MuHd_075 : 32.214 23.573 9.244 6.960 MuHd_095 : 17.148 14.895 6.063 4.559 MuHd_100 : 20.491 19.287 8.261 4.506 MuHd_105 : 26.733 21.467 9.660 5.491 Hmax_075 : 16.975 16.000 3.227 6.020 Hmax_095 : 2.888 7.525 0.253 3.071 Hmax_100 : 13.400 13.100 3.038 4.660 Hmax_105 : 10.500 9.217 1.865 3.570 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6105 0.3895 DFMC : 0.5915 0.4085
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 236 NF0056430 MLPKKTIAPLVGAPAAFDSRTKWPNCVHPIRNQEQCGSCWAFSASEVLSDRFCIASTGKDNVVLSPQYMVSCDTSDYGCD 80 GGYLNNAWNFLATTGIPTDSCVPYTSQNGDVAACPSTCQNGGSIKLYRAKNPQQLNDIPSIMADMEANGPVQAAFSVYRD 160 FMSYKSGVYHHVSGSLLGGHAIKIVGWGVDSVSNKPYWIVANSWGPSWGLNGFFWILRGSDECGIEDNVWGAGVLL 240 ................................................................................ 80 ................................................................................ 160 ............................................................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0056430 4 ---MLPK|KT 0.066 . NF0056430 5 --MLPKK|TI 0.100 . NF0056430 20 PAAFDSR|TK 0.079 . NF0056430 22 AFDSRTK|WP 0.058 . NF0056430 31 NCVHPIR|NQ 0.107 . NF0056430 51 SEVLSDR|FC 0.092 . NF0056430 59 CIASTGK|DN 0.067 . NF0056430 125 QNGGSIK|LY 0.071 . NF0056430 128 GSIKLYR|AK 0.126 . NF0056430 130 IKLYRAK|NP 0.066 . NF0056430 159 AAFSVYR|DF 0.112 . NF0056430 165 RDFMSYK|SG 0.076 . NF0056430 183 LGGHAIK|IV 0.113 . NF0056430 195 VDSVSNK|PY 0.084 . NF0056430 218 GFFWILR|GS 0.085 . ____________________________^_________________

  • Fasta :-

    >NF0056430 ATGCTCCCAAAGAAGACTATTGCTCCTCTCGTTGGTGCTCCAGCTGCTTTCGATTCAAGA ACCAAGTGGCCAAATTGCGTCCACCCAATCCGTAATCAAGAGCAATGTGGTTCCTGCTGG GCCTTCTCTGCCTCTGAAGTCTTGTCCGATCGTTTCTGTATTGCCTCCACTGGTAAAGAC AATGTTGTCTTGTCTCCTCAATACATGGTCTCTTGTGATACTTCTGACTATGGTTGTGAT GGTGGTTATTTGAACAATGCTTGGAATTTCTTGGCTACTACTGGTATTCCAACTGATTCC TGTGTCCCTTACACTTCCCAAAATGGAGATGTTGCTGCATGCCCAAGCACTTGTCAAAAC GGTGGATCCATCAAGTTGTACCGAGCAAAGAACCCACAACAATTGAACGACATTCCATCC ATCATGGCTGATATGGAAGCTAACGGACCAGTTCAAGCTGCCTTCTCCGTCTACCGTGAC TTTATGAGCTACAAGTCTGGTGTCTACCACCACGTTTCTGGATCATTGTTGGGTGGTCAT GCTATCAAGATTGTTGGTTGGGGTGTGGACAGTGTTTCCAACAAGCCATACTGGATTGTT GCCAACTCTTGGGGACCATCTTGGGGTTTGAATGGATTCTTCTGGATTTTGAGAGGAAGT GACGAATGTGGAATTGAAGACAACGTATGGGGTGCAGGAGTTTTACTTTAA
  • Download Fasta

  • Fasta :-

    MLPKKTIAPLVGAPAAFDSRTKWPNCVHPIRNQEQCGSCWAFSASEVLSDRFCIASTGKD NVVLSPQYMVSCDTSDYGCDGGYLNNAWNFLATTGIPTDSCVPYTSQNGDVAACPSTCQN GGSIKLYRAKNPQQLNDIPSIMADMEANGPVQAAFSVYRDFMSYKSGVYHHVSGSLLGGH AIKIVGWGVDSVSNKPYWIVANSWGPSWGLNGFFWILRGSDECGIEDNVWGAGVLL

  • title: active site
  • coordinates: Q33,C39,H180,N202
IDSitePositionGscoreIscore
NF0056430T60.5560.108
IDSitePositionGscoreIscore
NF0056430T60.5560.108
No Results

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India