NF0056560 | rhomboid-like protein 15

UniProt_ID:

Computed_GO_Component_IDs: GO:0016021
Computed_GO_Components: integral component of membrane
Computed_GO_Function_IDs: GO:0004252
Computed_GO_Functions: serine-type endopeptidase activity
Computed_GO_Process_IDs:
Computed_GO_Processes:
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0056560	OTHER	0.877373	0.000010	0.122617

No Results

Fasta :-
>NF0056560 MLNFGRGFFSPSGRPQELQHPRYQQLQSSSTRGFQTNTLVSSSATGANIHSIPSQEEQQY HIEDPIHIKVANWFRYFPLCSNIIFCACVILFVVQGVFNEPKSSDICYSYSASIKQAKVW QLFTFPFFHGSIMHILFNMLALYQFGNRIESTLGTIYFLFISLLMLILAAAIWVAIDALF IDAFKAGQVLGFLLDRCTVGYSGVLFGYLVFTVQYKPLFESLYPGAHYADFAPKLIPWLM LIVTSFLMPNVSLMGHLTGMLSGYAVWLMVRFISPLNKIFLFVDSKIPRFIRNRSFFFIA DETVFQEASVPSTRTDTSSETTATSSSQGGFFSNITQTVGGWFGRGNQGSTSSNSSHSWG RGRTLGNN
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0056560.fa Sequence name : NF0056560 Sequence length : 368 VALUES OF COMPUTED PARAMETERS Coef20 : 3.287 CoefTot : -2.187 ChDiff : 5 ZoneTo : 55 KR : 4 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.588 2.818 0.606 0.961 MesoH : 0.996 1.442 0.058 0.581 MuHd_075 : 29.199 20.930 6.860 6.742 MuHd_095 : 32.101 16.517 6.978 5.978 MuHd_100 : 37.207 15.539 7.691 7.101 MuHd_105 : 34.133 18.536 8.932 7.132 Hmax_075 : 5.800 9.683 1.156 3.488 Hmax_095 : 12.000 0.350 -3.365 3.690 Hmax_100 : 14.200 7.700 0.871 4.860 Hmax_105 : 15.000 8.500 0.858 4.560 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8334 0.1666 DFMC : 0.7729 0.2271

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 368 NF0056560 MLNFGRGFFSPSGRPQELQHPRYQQLQSSSTRGFQTNTLVSSSATGANIHSIPSQEEQQYHIEDPIHIKVANWFRYFPLC 80 SNIIFCACVILFVVQGVFNEPKSSDICYSYSASIKQAKVWQLFTFPFFHGSIMHILFNMLALYQFGNRIESTLGTIYFLF 160 ISLLMLILAAAIWVAIDALFIDAFKAGQVLGFLLDRCTVGYSGVLFGYLVFTVQYKPLFESLYPGAHYADFAPKLIPWLM 240 LIVTSFLMPNVSLMGHLTGMLSGYAVWLMVRFISPLNKIFLFVDSKIPRFIRNRSFFFIADETVFQEASVPSTRTDTSSE 320 TTATSSSQGGFFSNITQTVGGWFGRGNQGSTSSNSSHSWGRGRTLGNN 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0056560 6 -MLNFGR|GF 0.073 . NF0056560 14 FFSPSGR|PQ 0.105 . NF0056560 22 QELQHPR|YQ 0.086 . NF0056560 32 LQSSSTR|GF 0.119 . NF0056560 69 EDPIHIK|VA 0.063 . NF0056560 75 KVANWFR|YF 0.080 . NF0056560 102 GVFNEPK|SS 0.084 . NF0056560 115 SYSASIK|QA 0.078 . NF0056560 118 ASIKQAK|VW 0.064 . NF0056560 148 LYQFGNR|IE 0.079 . NF0056560 185 LFIDAFK|AG 0.057 . NF0056560 196 LGFLLDR|CT 0.074 . NF0056560 216 VFTVQYK|PL 0.065 . NF0056560 234 YADFAPK|LI 0.061 . NF0056560 271 AVWLMVR|FI 0.095 . NF0056560 278 FISPLNK|IF 0.062 . NF0056560 286 FLFVDSK|IP 0.057 . NF0056560 289 VDSKIPR|FI 0.115 . NF0056560 292 KIPRFIR|NR 0.182 . NF0056560 294 PRFIRNR|SF 0.131 . NF0056560 314 ASVPSTR|TD 0.101 . NF0056560 345 VGGWFGR|GN 0.117 . NF0056560 361 SSHSWGR|GR 0.106 . NF0056560 363 HSWGRGR|TL 0.116 . ____________________________^_________________

Fasta :-
>NF0056560 ATGCTGAATTTCGGAAGAGGTTTTTTTTCTCCAAGTGGAAGACCACAAGAATTACAACAT CCGAGGTATCAACAACTTCAATCCTCATCAACAAGAGGATTTCAAACAAACACACTAGTG TCATCAAGCGCAACAGGAGCAAATATTCATTCGATTCCTTCACAAGAAGAGCAGCAATAT CATATTGAAGATCCTATTCATATCAAAGTTGCGAATTGGTTCCGATATTTTCCATTATGT AGTAATATTATTTTCTGTGCTTGTGTAATATTGTTCGTTGTACAGGGCGTTTTTAATGAG CCAAAATCATCAGATATATGTTATAGTTATTCTGCCAGTATAAAACAAGCTAAAGTGTGG CAGTTATTTACATTTCCCTTTTTCCACGGATCAATTATGCATATTTTATTTAACATGCTA GCTCTTTATCAATTTGGAAATAGGATTGAGTCGACTCTTGGAACGATTTACTTTTTATTC ATTTCACTCTTAATGTTAATATTGGCTGCTGCCATTTGGGTTGCCATTGATGCGTTATTT ATTGATGCTTTCAAAGCAGGACAAGTGTTGGGATTTTTGCTTGACAGATGTACAGTTGGA TATAGTGGTGTATTGTTTGGTTATCTAGTGTTTACTGTGCAATACAAGCCACTCTTTGAG AGCTTGTATCCTGGAGCTCACTATGCAGATTTTGCTCCAAAATTAATTCCATGGTTGATG CTTATTGTGACATCTTTTCTAATGCCAAATGTGTCCTTAATGGGTCACCTTACAGGAATG TTAAGTGGATATGCTGTATGGCTCATGGTGAGATTTATTTCTCCTCTCAACAAGATTTTC CTTTTTGTCGATTCAAAAATTCCTCGATTCATTCGGAATCGTTCATTCTTTTTCATTGCA GACGAAACTGTATTTCAAGAAGCATCTGTTCCATCCACACGTACTGATACTTCTTCTGAA ACGACAGCAACATCTAGTTCACAAGGAGGTTTCTTTTCAAATATCACTCAAACTGTTGGA GGATGGTTTGGAAGAGGAAATCAAGGATCTACCAGCAGCAACAGCAGTCACAGCTGGGGT CGTGGTAGAACTTTAGGAAATAATTGA
Download Fasta

Fasta :-

MLNFGRGFFSPSGRPQELQHPRYQQLQSSSTRGFQTNTLVSSSATGANIHSIPSQEEQQY HIEDPIHIKVANWFRYFPLCSNIIFCACVILFVVQGVFNEPKSSDICYSYSASIKQAKVW QLFTFPFFHGSIMHILFNMLALYQFGNRIESTLGTIYFLFISLLMLILAAAIWVAIDALF IDAFKAGQVLGFLLDRCTVGYSGVLFGYLVFTVQYKPLFESLYPGAHYADFAPKLIPWLM LIVTSFLMPNVSLMGHLTGMLSGYAVWLMVRFISPLNKIFLFVDSKIPRFIRNRSFFFIA DETVFQEASVPSTRTDTSSETTATSSSQGGFFSNITQTVGGWFGRGNQGSTSSNSSHSWG RGRTLGNN

Rhomboid-like

No Results

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0056560	T	315	0.651	0.034	NF0056560	T	317	0.650	0.020	NF0056560	T	324	0.643	0.289	NF0056560	T	321	0.638	0.028	NF0056560	T	313	0.637	0.044	NF0056560	T	322	0.637	0.025	NF0056560	S	318	0.574	0.030	NF0056560	S	312	0.527	0.332	NF0056560	S	319	0.526	0.031	NF0056560	S	325	0.519	0.026	NF0056560	T	364	0.513	0.050	NF0056560	S	326	0.504	0.028

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0056560	T	315	0.651	0.034	NF0056560	T	317	0.650	0.020	NF0056560	T	324	0.643	0.289	NF0056560	T	321	0.638	0.028	NF0056560	T	313	0.637	0.044	NF0056560	T	322	0.637	0.025	NF0056560	S	318	0.574	0.030	NF0056560	S	312	0.527	0.332	NF0056560	S	319	0.526	0.031	NF0056560	S	325	0.519	0.026	NF0056560	T	364	0.513	0.050	NF0056560	S	326	0.504	0.028

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NF0056560	318 S	RTDTSSETT	0.994	unsp	NF0056560	318 S	RTDTSSETT	0.994	unsp	NF0056560	318 S	RTDTSSETT	0.994	unsp	NF0056560	356 S	SSNSSHSWG	0.996	unsp	NF0056560	358 S	NSSHSWGRG	0.998	unsp	NF0056560	54 S	HSIPSQEEQ	0.996	unsp	NF0056560	317 T	TRTDTSSET	0.991	unsp

NF0056560 | rhomboid-like protein 15

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs: GO:0016021

Computed_GO_Components: integral component of membrane

Computed_GO_Function_IDs: GO:0004252

Computed_GO_Functions: serine-type endopeptidase activity

Computed_GO_Process_IDs:

Computed_GO_Processes:

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Rhomboid-like

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India