NF0059180 | proteasome subunit beta type-4

_IDPredictionOTHERSPmTPCS_Position
NF0059180OTHER0.9994500.0003700.000180
No Results

  • Fasta :-

    >NF0059180 MNARNMWMNNIVIKWNGDDINYDSHWTIVLIIIIIINTNIRPYFFDDSFQHRDPIVTGTS ILGIRYNGGVMLCSDTLGSYGSLARFRSIERIKKIGSNTIVGASGEYSDFQYITDLLEQL VDRDYCADDKIETSPKAIYQYLVRIMYNRRNRFNPLWNTLIVAGFKDGKSFLGYTDLLGS NFEDDTMASGYGAYLAKPILRNFLDSKNGDVNNISEQEAREVLEKCMKVLYYRDARSLNK IQIATATASGLTISEPYSLQTEWAFKGF
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0059180.fa Sequence name : NF0059180 Sequence length : 268 VALUES OF COMPUTED PARAMETERS Coef20 : 3.834 CoefTot : -0.757 ChDiff : -2 ZoneTo : 17 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.324 1.865 0.136 0.715 MesoH : -0.476 0.405 -0.286 0.252 MuHd_075 : 34.609 17.932 8.052 7.494 MuHd_095 : 9.947 8.114 3.258 1.431 MuHd_100 : 8.388 3.576 1.305 0.563 MuHd_105 : 10.776 1.836 2.547 1.395 Hmax_075 : 8.800 7.600 -0.608 4.270 Hmax_095 : 2.200 6.100 -2.404 2.880 Hmax_100 : -2.600 3.600 -3.648 1.670 Hmax_105 : 7.233 3.967 -1.550 3.698 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9388 0.0612 DFMC : 0.9530 0.0470
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 268 NF0059180 MNARNMWMNNIVIKWNGDDINYDSHWTIVLIIIIIINTNIRPYFFDDSFQHRDPIVTGTSILGIRYNGGVMLCSDTLGSY 80 GSLARFRSIERIKKIGSNTIVGASGEYSDFQYITDLLEQLVDRDYCADDKIETSPKAIYQYLVRIMYNRRNRFNPLWNTL 160 IVAGFKDGKSFLGYTDLLGSNFEDDTMASGYGAYLAKPILRNFLDSKNGDVNNISEQEAREVLEKCMKVLYYRDARSLNK 240 IQIATATASGLTISEPYSLQTEWAFKGF 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0059180 4 ---MNAR|NM 0.083 . NF0059180 14 MNNIVIK|WN 0.092 . NF0059180 41 IINTNIR|PY 0.076 . NF0059180 52 DDSFQHR|DP 0.131 . NF0059180 65 TSILGIR|YN 0.123 . NF0059180 85 SYGSLAR|FR 0.095 . NF0059180 87 GSLARFR|SI 0.188 . NF0059180 91 RFRSIER|IK 0.077 . NF0059180 93 RSIERIK|KI 0.072 . NF0059180 94 SIERIKK|IG 0.216 . NF0059180 123 LEQLVDR|DY 0.109 . NF0059180 130 DYCADDK|IE 0.051 . NF0059180 136 KIETSPK|AI 0.079 . NF0059180 144 IYQYLVR|IM 0.073 . NF0059180 149 VRIMYNR|RN 0.081 . NF0059180 150 RIMYNRR|NR 0.099 . NF0059180 152 MYNRRNR|FN 0.218 . NF0059180 166 LIVAGFK|DG 0.061 . NF0059180 169 AGFKDGK|SF 0.071 . NF0059180 197 YGAYLAK|PI 0.068 . NF0059180 201 LAKPILR|NF 0.088 . NF0059180 207 RNFLDSK|NG 0.061 . NF0059180 220 ISEQEAR|EV 0.120 . NF0059180 225 AREVLEK|CM 0.058 . NF0059180 228 VLEKCMK|VL 0.056 . NF0059180 233 MKVLYYR|DA 0.110 . NF0059180 236 LYYRDAR|SL 0.488 . NF0059180 240 DARSLNK|IQ 0.058 . NF0059180 266 QTEWAFK|GF 0.066 . ____________________________^_________________

  • Fasta :-

    >NF0059180 ATGAACGCACGGAACATGTGGATGAATAATATTGTGATTAAATGGAATGGTGATGATATC AACTATGATTCACATTGGACAATTGTTTTAATCATTATCATCATTATCAATACAAACATC CGACCATACTTTTTCGATGATTCCTTTCAACATAGAGATCCAATCGTTACAGGAACATCC ATCTTGGGAATTCGATACAACGGAGGAGTCATGTTGTGTTCTGATACATTGGGATCTTAT GGTTCACTTGCAAGATTCCGTTCCATAGAAAGAATTAAAAAGATTGGTAGTAATACCATT GTAGGTGCATCCGGAGAGTACTCTGATTTCCAATATATTACTGATTTGTTGGAACAATTA GTAGATCGAGATTATTGTGCTGATGATAAGATTGAAACTTCACCAAAAGCTATTTATCAA TATCTTGTTCGTATAATGTATAACAGAAGAAATAGATTCAATCCATTGTGGAATACTTTG ATTGTTGCAGGATTTAAGGATGGCAAGTCATTCTTGGGATATACTGATTTATTGGGATCA AACTTTGAGGACGATACTATGGCTTCAGGTTATGGAGCTTATTTGGCTAAACCAATTCTT AGAAATTTCCTCGATAGTAAGAATGGAGATGTAAATAATATTTCAGAGCAAGAAGCAAGA GAAGTTTTGGAAAAGTGCATGAAAGTTCTCTACTACAGAGATGCCAGAAGTCTTAACAAG ATTCAAATTGCTACTGCCACTGCTAGCGGTCTCACTATTTCTGAGCCTTATTCTTTGCAA ACCGAATGGGCATTCAAAGGATTTTAA
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  • Fasta :-

    MNARNMWMNNIVIKWNGDDINYDSHWTIVLIIIIIINTNIRPYFFDDSFQHRDPIVTGTS ILGIRYNGGVMLCSDTLGSYGSLARFRSIERIKKIGSNTIVGASGEYSDFQYITDLLEQL VDRDYCADDKIETSPKAIYQYLVRIMYNRRNRFNPLWNTLIVAGFKDGKSFLGYTDLLGS NFEDDTMASGYGAYLAKPILRNFLDSKNGDVNNISEQEAREVLEKCMKVLYYRDARSLNK IQIATATASGLTISEPYSLQTEWAFKGF

  • title: active site
  • coordinates: T59,D75,L77,R91,Y191,D234,S237,L238
No Results
No Results
IDSitePeptideScoreMethod
NF0059180134 SKIETSPKAI0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India