NF0060520 | derlin-2-like

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_IDPredictionOTHERSPmTPCS_Position
NF0060520OTHER0.9993810.0000880.000531
No Results

  • Fasta :-

    >NF0060520 MNLEQWYFSIPVITRTFLTLSTITSFAVTFDLLSPLQLYLNFHSVFYQYQLWRLITNFLF FDKFSINFILHLYFLYFYCRRLEEHSFHRKTADFFYLILFGSVAMICISPLLQLPFMSHS LVIMLLYIWSRRNPHEQFRIYGIFTVAAGYLSWVLLGVGLLMGMSPVVDLVGIAVGHVYF YLKDVIPGEFPGVDPMKTPSFLCKLFPGDHQEIEHAPVFRDPPNFFDVNRNEEEERMREQ IAENRENAEGNAASNNDENVEDETPHNDNLSNNQGISPTELHRRHTSRDEHAEDNE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0060520.fa Sequence name : NF0060520 Sequence length : 296 VALUES OF COMPUTED PARAMETERS Coef20 : 4.411 CoefTot : -0.878 ChDiff : -15 ZoneTo : 82 KR : 5 DE : 3 CleavSite : 63 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.171 2.176 0.462 0.774 MesoH : 0.825 1.156 -0.012 0.504 MuHd_075 : 45.661 29.864 12.650 9.783 MuHd_095 : 24.924 16.507 6.798 5.034 MuHd_100 : 28.835 19.107 7.434 6.860 MuHd_105 : 30.359 21.863 9.074 7.709 Hmax_075 : 22.900 25.000 4.469 8.600 Hmax_095 : 16.400 14.175 2.370 5.680 Hmax_100 : 18.600 15.100 1.541 6.960 Hmax_105 : 15.600 14.700 3.480 6.220 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7465 0.2535 DFMC : 0.5190 0.4810
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 296 NF0060520 MNLEQWYFSIPVITRTFLTLSTITSFAVTFDLLSPLQLYLNFHSVFYQYQLWRLITNFLFFDKFSINFILHLYFLYFYCR 80 RLEEHSFHRKTADFFYLILFGSVAMICISPLLQLPFMSHSLVIMLLYIWSRRNPHEQFRIYGIFTVAAGYLSWVLLGVGL 160 LMGMSPVVDLVGIAVGHVYFYLKDVIPGEFPGVDPMKTPSFLCKLFPGDHQEIEHAPVFRDPPNFFDVNRNEEEERMREQ 240 IAENRENAEGNAASNNDENVEDETPHNDNLSNNQGISPTELHRRHTSRDEHAEDNE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0060520 15 SIPVITR|TF 0.068 . NF0060520 53 YQYQLWR|LI 0.086 . NF0060520 63 NFLFFDK|FS 0.061 . NF0060520 80 FLYFYCR|RL 0.081 . NF0060520 81 LYFYCRR|LE 0.110 . NF0060520 89 EEHSFHR|KT 0.093 . NF0060520 90 EHSFHRK|TA 0.107 . NF0060520 131 LLYIWSR|RN 0.081 . NF0060520 132 LYIWSRR|NP 0.149 . NF0060520 139 NPHEQFR|IY 0.135 . NF0060520 183 HVYFYLK|DV 0.112 . NF0060520 197 PGVDPMK|TP 0.062 . NF0060520 204 TPSFLCK|LF 0.075 . NF0060520 220 EHAPVFR|DP 0.103 . NF0060520 230 NFFDVNR|NE 0.094 . NF0060520 236 RNEEEER|MR 0.099 . NF0060520 238 EEEERMR|EQ 0.082 . NF0060520 245 EQIAENR|EN 0.082 . NF0060520 283 SPTELHR|RH 0.070 . NF0060520 284 PTELHRR|HT 0.208 . NF0060520 288 HRRHTSR|DE 0.197 . ____________________________^_________________

  • Fasta :-

    >NF0060520 ATGAACCTCGAACAATGGTACTTCTCGATACCTGTCATTACTCGGACATTCCTCACACTT TCCACGATCACAAGCTTTGCTGTTACATTTGACTTATTGAGTCCACTTCAACTCTATTTA AATTTCCACAGTGTATTTTATCAATATCAGCTATGGCGATTAATCACCAACTTTTTATTC TTTGATAAATTCAGTATTAATTTTATACTTCATTTGTATTTCCTCTATTTCTATTGTAGG AGGCTTGAGGAGCATTCATTTCATAGAAAAACAGCGGATTTCTTTTATTTAATATTATTC GGATCAGTTGCAATGATTTGTATTTCTCCTCTTCTTCAACTTCCTTTCATGAGTCATTCT CTAGTAATCATGTTACTTTATATTTGGAGTCGAAGAAATCCTCATGAACAGTTTCGTATT TATGGAATATTTACTGTCGCTGCTGGATACCTTTCATGGGTGCTGTTAGGAGTTGGATTA TTGATGGGAATGAGTCCCGTTGTGGATCTAGTTGGAATTGCTGTTGGACATGTTTACTTT TACTTGAAAGATGTTATTCCTGGAGAGTTTCCAGGTGTTGATCCCATGAAAACGCCATCA TTTCTTTGTAAATTATTTCCTGGAGATCATCAAGAAATTGAGCATGCTCCAGTATTTAGG GATCCTCCAAATTTCTTTGATGTGAACAGAAATGAGGAGGAAGAGCGAATGCGTGAACAA ATTGCAGAAAACAGGGAAAATGCAGAAGGTAATGCTGCTTCTAATAATGATGAAAATGTT GAGGACGAAACACCTCATAACGATAACTTATCAAACAATCAAGGAATCAGTCCAACGGAG TTACACCGTAGACATACATCAAGAGATGAACACGCTGAAGACAACGAGTAA
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  • Fasta :-

    MNLEQWYFSIPVITRTFLTLSTITSFAVTFDLLSPLQLYLNFHSVFYQYQLWRLITNFLF FDKFSINFILHLYFLYFYCRRLEEHSFHRKTADFFYLILFGSVAMICISPLLQLPFMSHS LVIMLLYIWSRRNPHEQFRIYGIFTVAAGYLSWVLLGVGLLMGMSPVVDLVGIAVGHVYF YLKDVIPGEFPGVDPMKTPSFLCKLFPGDHQEIEHAPVFRDPPNFFDVNRNEEEERMREQ IAENRENAEGNAASNNDENVEDETPHNDNLSNNQGISPTELHRRHTSRDEHAEDNE

    No Results
No Results
No Results
IDSitePeptideScoreMethod
NF0060520286 THRRHTSRDE0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India