Warning : mysqli_connect(): (HY000/1045): Access denied for user 'root'@'localhost' (using password: YES) in /opt/lampp/htdocs/ProtPathDB/database/db_connect.php on line 2
Failed to connect to MySQL: Access denied for user 'root'@'localhost' (using password: YES)
ProtPathDB
Targetp
Signalp
Mitoprot
MitoProt II - v1.101
File : /home/rajan/sadaf/4480_mitoprot/test/NF0077300.fa
Sequence name : NF0077300
Sequence length : 276
VALUES OF COMPUTED PARAMETERS
Coef20 : 5.212
CoefTot : 0.576
ChDiff : 3
ZoneTo : 75
KR : 9
DE : 1
CleavSite : 71
HYDROPHOBIC SCALE USED
GES KD GVH1 ECS
H17 : 1.200 1.394 0.037 0.525
MesoH : -0.377 0.542 -0.272 0.325
MuHd_075 : 41.127 24.473 10.709 9.392
MuHd_095 : 38.680 26.374 10.766 9.305
MuHd_100 : 35.900 26.063 11.740 8.898
MuHd_105 : 30.008 23.626 11.337 8.374
Hmax_075 : 14.787 9.800 0.849 3.535
Hmax_095 : 8.400 17.900 4.331 5.970
Hmax_100 : 7.800 13.300 3.589 4.690
Hmax_105 : 4.100 11.200 3.918 4.180
CLASS NOT-MITO MITO(/CHLORO)
DFM : 0.0064 0.9936
DFMC : 0.0055 0.9945
This protein is probably imported in chloroplast.
f(Ser) = 0.1867 f(Arg) = 0.0800 CMi = 1.02564
CMi is the Chloroplast/Mitochondria Index
It has been proposed by Von Heijne et al
(Eur J Biochem,1989, 180: 535-545)
##### ProP v.1.0b ProPeptide Cleavage Site Prediction #####
##### Furin-type cleavage site prediction (Arginine/Lysine residues) #####
276 NF0077300
MKRASXXXXXXXXSLIAFRNQTNKSFLSPFTTMTSSIVIGRRVSSRSSLNFMGNNYSNFDRNISSLYHTCLKSAAEDRST 80
MDGSRDMHGTTVLCVRKAGKVCLQADGQVTLGNVVMKGNARKLRQIGQDVIAGFAGSTADAITLFERLESKLEEYPGQLM 160
RACVEMAKLWRTDKYLRKLEAVMIVADKNITLIITGNGDVLEPTEGGANDSVVGIGSGGHYAISAAKALLDVDGFDAEAI 240
AQKAMLIAGEICIYTNTNFTKLILEEKDGKLEITEK 320
................................................................................ 80
...........................................P.................................... 160
................................................................................ 240
.................................... 320
Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1
Name Pos Context Score Pred
____________________________v_________________
NF0077300 2 -----MK|RA 0.080 .
NF0077300 3 ----MKR|AS 0.251 .
NF0077300 19 XSLIAFR|NQ 0.074 .
NF0077300 24 FRNQTNK|SF 0.093 .
NF0077300 41 SSIVIGR|RV 0.103 .
NF0077300 42 SIVIGRR|VS 0.110 .
NF0077300 46 GRRVSSR|SS 0.165 .
NF0077300 61 NYSNFDR|NI 0.128 .
NF0077300 72 LYHTCLK|SA 0.085 .
NF0077300 78 KSAAEDR|ST 0.231 .
NF0077300 85 STMDGSR|DM 0.097 .
NF0077300 96 TTVLCVR|KA 0.128 .
NF0077300 97 TVLCVRK|AG 0.074 .
NF0077300 100 CVRKAGK|VC 0.066 .
NF0077300 117 LGNVVMK|GN 0.095 .
NF0077300 121 VMKGNAR|KL 0.108 .
NF0077300 122 MKGNARK|LR 0.092 .
NF0077300 124 GNARKLR|QI 0.544 *ProP*
NF0077300 147 AITLFER|LE 0.081 .
NF0077300 151 FERLESK|LE 0.057 .
NF0077300 161 YPGQLMR|AC 0.086 .
NF0077300 168 ACVEMAK|LW 0.060 .
NF0077300 171 EMAKLWR|TD 0.077 .
NF0077300 174 KLWRTDK|YL 0.183 .
NF0077300 177 RTDKYLR|KL 0.089 .
NF0077300 178 TDKYLRK|LE 0.073 .
NF0077300 188 VMIVADK|NI 0.064 .
NF0077300 227 YAISAAK|AL 0.064 .
NF0077300 243 AEAIAQK|AM 0.063 .
NF0077300 261 TNTNFTK|LI 0.074 .
NF0077300 267 KLILEEK|DG 0.061 .
NF0077300 270 LEEKDGK|LE 0.058 .
NF0077300 276 KLEITEK|-- 0.065 .
____________________________^_________________
Nucleotide sequence
Protein sequence
N_Linked Glycosylation
O_Linked Glycosylation
Phosphorylation