NF0081870 | caax prenyl protease 2-like

  • Computed_GO_Component_IDs:  GO:0016020      

  • Computed_GO_Components:  membrane      

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_IDPredictionOTHERSPmTPCS_Position
NF0081870OTHER0.9912440.0043460.004411
No Results

  • Fasta :-

    >NF0081870 MAFHKKMSSTTTSIVLSLFHSVILSGLYVGSLYMWKGSLAKSRNDPSQIRKRTISALAST VISIVYCWIVYLMSTSINHTITTTTTISTTQNSNEFIGSESLGFSAMMGIDFYRIFSQLF GVIAALFLNSCLFLGPIAEALNVESVTSVSEIIPFLQKSVQYLKREFIELCHDLFEILKQ YPKFLMNEENVIKYERGGFDKSEEAIFSFRSIVIGPITEEVVFRSCLYFILHYFGGFSMM TSFLVSAILFGVAHCHHIIEHVLHGDMELRAAILNVAVQLTYTFVFGLYCGYIYGKTKSI IAAIVLHAYCNLMGLPSFNMSRPVLACAYITGLVLFWVLLFPVLSVF
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0081870.fa Sequence name : NF0081870 Sequence length : 347 VALUES OF COMPUTED PARAMETERS Coef20 : 4.523 CoefTot : -0.148 ChDiff : 1 ZoneTo : 94 KR : 8 DE : 1 CleavSite : 62 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.353 2.453 0.461 0.875 MesoH : 1.023 1.287 0.086 0.523 MuHd_075 : 27.431 20.162 7.673 6.181 MuHd_095 : 24.363 23.994 7.871 8.226 MuHd_100 : 24.468 22.238 8.134 8.169 MuHd_105 : 19.233 17.485 6.956 5.980 Hmax_075 : -7.233 12.367 -4.251 2.840 Hmax_095 : 19.400 18.900 3.516 7.332 Hmax_100 : 0.200 22.900 2.970 7.830 Hmax_105 : 16.700 18.100 -3.364 7.530 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3230 0.6770 DFMC : 0.1782 0.8218 This protein is probably imported in chloroplast. f(Ser) = 0.1809 f(Arg) = 0.0319 CMi = 1.57699 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 347 NF0081870 MAFHKKMSSTTTSIVLSLFHSVILSGLYVGSLYMWKGSLAKSRNDPSQIRKRTISALASTVISIVYCWIVYLMSTSINHT 80 ITTTTTISTTQNSNEFIGSESLGFSAMMGIDFYRIFSQLFGVIAALFLNSCLFLGPIAEALNVESVTSVSEIIPFLQKSV 160 QYLKREFIELCHDLFEILKQYPKFLMNEENVIKYERGGFDKSEEAIFSFRSIVIGPITEEVVFRSCLYFILHYFGGFSMM 240 TSFLVSAILFGVAHCHHIIEHVLHGDMELRAAILNVAVQLTYTFVFGLYCGYIYGKTKSIIAAIVLHAYCNLMGLPSFNM 320 SRPVLACAYITGLVLFWVLLFPVLSVF 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ........................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0081870 5 --MAFHK|KM 0.065 . NF0081870 6 -MAFHKK|MS 0.151 . NF0081870 36 GSLYMWK|GS 0.060 . NF0081870 41 WKGSLAK|SR 0.067 . NF0081870 43 GSLAKSR|ND 0.092 . NF0081870 50 NDPSQIR|KR 0.072 . NF0081870 51 DPSQIRK|RT 0.103 . NF0081870 52 PSQIRKR|TI 0.283 . NF0081870 114 MGIDFYR|IF 0.114 . NF0081870 158 IIPFLQK|SV 0.079 . NF0081870 164 KSVQYLK|RE 0.058 . NF0081870 165 SVQYLKR|EF 0.194 . NF0081870 179 DLFEILK|QY 0.059 . NF0081870 183 ILKQYPK|FL 0.073 . NF0081870 193 NEENVIK|YE 0.066 . NF0081870 196 NVIKYER|GG 0.081 . NF0081870 201 ERGGFDK|SE 0.106 . NF0081870 210 EAIFSFR|SI 0.160 . NF0081870 224 TEEVVFR|SC 0.134 . NF0081870 270 HGDMELR|AA 0.088 . NF0081870 296 CGYIYGK|TK 0.063 . NF0081870 298 YIYGKTK|SI 0.102 . NF0081870 322 PSFNMSR|PV 0.097 . ____________________________^_________________

  • Fasta :-

    >NF0081870 ATGGCATTTCACAAAAAAATGTCATCCACAACAACATCCATCGTGTTGTCTCTCTTTCAT TCGGTGATCCTCTCGGGTTTGTATGTCGGATCACTCTACATGTGGAAAGGAAGTTTAGCA AAATCTCGGAATGATCCTTCACAAATTCGAAAACGAACCATTTCAGCGTTAGCTTCTACG GTCATTTCGATTGTGTATTGTTGGATTGTATATTTAATGAGCACTAGTATTAATCATACA ATCACTACCACCACCACCATTAGTACTACTCAAAATAGTAACGAATTCATAGGATCGGAA TCGTTAGGATTTAGTGCTATGATGGGAATTGACTTTTATAGAATATTTTCACAACTATTT GGTGTGATAGCAGCATTGTTTTTGAACTCGTGTTTGTTTTTAGGTCCTATTGCTGAAGCA TTGAATGTTGAGAGTGTGACTTCCGTGTCAGAGATTATTCCATTCTTACAAAAATCTGTT CAATATCTGAAAAGGGAATTTATTGAGCTTTGCCATGATTTATTTGAAATTTTAAAACAA TATCCAAAGTTTTTAATGAATGAAGAAAATGTCATCAAATATGAGAGAGGTGGATTTGAT AAATCAGAAGAGGCAATATTTTCGTTTCGATCCATTGTGATTGGTCCAATCACTGAGGAA GTTGTTTTCAGAAGTTGTCTCTACTTTATTTTACATTATTTTGGTGGATTTTCCATGATG ACGTCATTTCTAGTTAGTGCCATTCTTTTTGGAGTCGCCCATTGCCATCACATTATTGAA CATGTGTTACATGGTGACATGGAGCTGAGAGCTGCTATTTTGAATGTTGCTGTTCAATTG ACCTATACATTTGTTTTTGGACTTTATTGTGGATATATTTATGGAAAAACCAAAAGCATT ATTGCTGCGATTGTGTTGCATGCCTATTGTAATTTGATGGGACTTCCAAGTTTCAACATG AGTAGACCTGTGTTGGCATGTGCCTACATTACTGGACTCGTATTGTTTTGGGTGCTCCTC TTCCCTGTATTGTCCGTCTTTTAA
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  • Fasta :-

    MAFHKKMSSTTTSIVLSLFHSVILSGLYVGSLYMWKGSLAKSRNDPSQIRKRTISALAST VISIVYCWIVYLMSTSINHTITTTTTISTTQNSNEFIGSESLGFSAMMGIDFYRIFSQLF GVIAALFLNSCLFLGPIAEALNVESVTSVSEIIPFLQKSVQYLKREFIELCHDLFEILKQ YPKFLMNEENVIKYERGGFDKSEEAIFSFRSIVIGPITEEVVFRSCLYFILHYFGGFSMM TSFLVSAILFGVAHCHHIIEHVLHGDMELRAAILNVAVQLTYTFVFGLYCGYIYGKTKSI IAAIVLHAYCNLMGLPSFNMSRPVLACAYITGLVLFWVLLFPVLSVF

    No Results
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IDSitePeptideScoreMethod
NF008187042 SSLAKSRNDP0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India