NF0089880 | glutathione gamma-glutamylcysteinyltransferase 3-like

_IDPredictionOTHERSPmTPCS_Position
NF0089880OTHER0.7792380.0023020.218460
No Results

  • Fasta :-

    >NF0089880 MFCRNCFISKKFCTVDIFLPLLPIMQRGKRPLYYWSRSLSFLCDNNRDMVLILDVARFKY PPHWISLEKMWEALYPIDSATGLSRGFIIIKRDNVQKEDQTICYRVVLREKWSETLSKLL TFTRAITEAYKKKVQSESLLDTTPIDISQFCHSIVQILSGSIYEVLEPLLTLDNNISDEL KKLFK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0089880.fa Sequence name : NF0089880 Sequence length : 185 VALUES OF COMPUTED PARAMETERS Coef20 : 4.492 CoefTot : -0.469 ChDiff : 5 ZoneTo : 43 KR : 7 DE : 1 CleavSite : 47 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.882 1.388 0.055 0.528 MesoH : -0.911 0.174 -0.455 0.141 MuHd_075 : 32.161 23.097 10.113 7.577 MuHd_095 : 38.938 23.722 9.389 9.432 MuHd_100 : 45.050 25.948 10.026 10.642 MuHd_105 : 45.810 27.070 10.334 10.840 Hmax_075 : 22.100 24.700 7.476 7.157 Hmax_095 : 14.175 9.713 2.099 4.524 Hmax_100 : 15.600 11.900 2.841 5.650 Hmax_105 : 15.300 19.900 3.151 4.524 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0732 0.9268 DFMC : 0.1070 0.8930 This protein is probably imported in mitochondria. f(Ser) = 0.0930 f(Arg) = 0.0930 CMi = 0.46458 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 185 NF0089880 MFCRNCFISKKFCTVDIFLPLLPIMQRGKRPLYYWSRSLSFLCDNNRDMVLILDVARFKYPPHWISLEKMWEALYPIDSA 80 TGLSRGFIIIKRDNVQKEDQTICYRVVLREKWSETLSKLLTFTRAITEAYKKKVQSESLLDTTPIDISQFCHSIVQILSG 160 SIYEVLEPLLTLDNNISDELKKLFK 240 ................................................................................ 80 ................................................................................ 160 ......................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0089880 4 ---MFCR|NC 0.091 . NF0089880 10 RNCFISK|KF 0.066 . NF0089880 11 NCFISKK|FC 0.095 . NF0089880 27 LLPIMQR|GK 0.081 . NF0089880 29 PIMQRGK|RP 0.052 . NF0089880 30 IMQRGKR|PL 0.422 . NF0089880 37 PLYYWSR|SL 0.113 . NF0089880 47 FLCDNNR|DM 0.084 . NF0089880 57 LILDVAR|FK 0.085 . NF0089880 59 LDVARFK|YP 0.061 . NF0089880 69 HWISLEK|MW 0.071 . NF0089880 85 SATGLSR|GF 0.092 . NF0089880 91 RGFIIIK|RD 0.061 . NF0089880 92 GFIIIKR|DN 0.277 . NF0089880 97 KRDNVQK|ED 0.066 . NF0089880 105 DQTICYR|VV 0.080 . NF0089880 109 CYRVVLR|EK 0.085 . NF0089880 111 RVVLREK|WS 0.059 . NF0089880 118 WSETLSK|LL 0.062 . NF0089880 124 KLLTFTR|AI 0.091 . NF0089880 131 AITEAYK|KK 0.059 . NF0089880 132 ITEAYKK|KV 0.086 . NF0089880 133 TEAYKKK|VQ 0.145 . NF0089880 181 NISDELK|KL 0.071 . NF0089880 182 ISDELKK|LF 0.087 . NF0089880 185 ELKKLFK|-- 0.065 . ____________________________^_________________

  • Fasta :-

    >NF0089880 ATGTTTTGCAGGAATTGTTTTATATCTAAAAAATTTTGTACAGTGGACATTTTTCTCCCA TTGCTGCCTATAATGCAAAGAGGTAAGCGACCTTTGTATTATTGGTCAAGATCATTATCA TTTCTGTGTGACAACAATAGAGACATGGTGTTAATTCTTGATGTTGCAAGGTTCAAGTAC CCTCCTCACTGGATTTCATTAGAAAAGATGTGGGAAGCTCTTTACCCAATTGACAGTGCT ACTGGCCTTTCTCGAGGATTTATCATTATCAAAAGAGACAATGTCCAAAAAGAGGATCAG ACAATTTGCTACAGAGTGGTTTTGCGAGAAAAATGGTCAGAAACGCTTTCTAAGCTGTTA ACATTTACCAGAGCCATTACTGAAGCATATAAGAAAAAAGTTCAGAGTGAATCTTTACTC GACACAACACCTATTGATATTAGCCAATTCTGTCATAGCATAGTTCAAATACTGAGCGGA TCAATTTATGAAGTTTTGGAGCCACTGCTCACACTTGACAATAACATCTCTGATGAGTTG AAAAAGCTATTTAAATAAAATATGAATAATATATTCATATTATAACATAACATTACAAAA TCGAAGAAATTTCCAAGTTTGAGCCGGATAGAACAAAAGCTATTATGATTTCTGTACTCA TGATAAGTATGCCATCTCAATTATTTGAGGAAATCCCATTAAGATTAGCCCATGAGAAAA TTAAGTCTCCGCTTGACTATGTGTGCAACTCGAATTGCTGTAAAACAATTCTTGAATCTA ACATTAATCAAATTTCTACCCAATTGAGAGCATTGCTGGAATTGAGTCTGGAAAAGTAG
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  • Fasta :-

    MFCRNCFISKKFCTVDIFLPLLPIMQRGKRPLYYWSRSLSFLCDNNRDMVLILDVARFKY PPHWISLEKMWEALYPIDSATGLSRGFIIIKRDNVQKEDQTICYRVVLREKWSETLSKLL TFTRAITEAYKKKVQSESLLDTTPIDISQFCHSIVQILSGSIYEVLEPLLTLDNNISDEL KKLFK

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India