NF0094840 | proteasome subunit alpha type 7

UniProt_ID:

Computed_GO_Component_IDs: GO:0005839 GO:0019773
Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex
Computed_GO_Function_IDs: GO:0004175 GO:0004298
Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603 GO:0006511
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0094840	OTHER	0.999873	0.000043	0.000085

No Results

Fasta :-
>NF0094840 MSRYDRAITVFSPNGHLFQVEYAMEAVRKGSTAVGVKGNNVIVLAVERKAAAKLQETRSV RKIVKIDDHCALAFAGLTADARVLINKARLHAQSYALQFEDQVSIDYITRYIAQVQQKYT QSGGVRPFGISTIIAGFEPNGTPTLSQTDPSGTFSSWKANTCGRNSKTVKEFLEKNYDND IFGTEGPADDESRAVKLAIKALLEVVESGGKNIEVAVLKYKEPLRFLTDEEVGAYVDDIE KQKKLEEESKKQKKDRSQQQQ
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0094840.fa Sequence name : NF0094840 Sequence length : 261 VALUES OF COMPUTED PARAMETERS Coef20 : 4.033 CoefTot : -0.669 ChDiff : 3 ZoneTo : 20 KR : 2 DE : 1 CleavSite : 16 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.712 1.300 0.010 0.435 MesoH : -0.700 0.243 -0.415 0.126 MuHd_075 : 12.676 9.551 3.633 2.101 MuHd_095 : 15.826 6.219 3.450 3.664 MuHd_100 : 23.858 13.477 5.427 6.183 MuHd_105 : 29.597 19.778 7.418 8.128 Hmax_075 : -0.088 6.000 -1.006 1.760 Hmax_095 : 8.100 5.700 -0.869 3.400 Hmax_100 : 15.800 7.400 2.002 5.800 Hmax_105 : 10.000 10.600 0.091 4.700 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9843 0.0157 DFMC : 0.9718 0.0282

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 261 NF0094840 MSRYDRAITVFSPNGHLFQVEYAMEAVRKGSTAVGVKGNNVIVLAVERKAAAKLQETRSVRKIVKIDDHCALAFAGLTAD 80 ARVLINKARLHAQSYALQFEDQVSIDYITRYIAQVQQKYTQSGGVRPFGISTIIAGFEPNGTPTLSQTDPSGTFSSWKAN 160 TCGRNSKTVKEFLEKNYDNDIFGTEGPADDESRAVKLAIKALLEVVESGGKNIEVAVLKYKEPLRFLTDEEVGAYVDDIE 240 KQKKLEEESKKQKKDRSQQQQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ..................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0094840 3 ----MSR|YD 0.097 . NF0094840 6 -MSRYDR|AI 0.303 . NF0094840 28 YAMEAVR|KG 0.093 . NF0094840 29 AMEAVRK|GS 0.109 . NF0094840 37 STAVGVK|GN 0.068 . NF0094840 48 IVLAVER|KA 0.090 . NF0094840 49 VLAVERK|AA 0.122 . NF0094840 53 ERKAAAK|LQ 0.064 . NF0094840 58 AKLQETR|SV 0.193 . NF0094840 61 QETRSVR|KI 0.241 . NF0094840 62 ETRSVRK|IV 0.099 . NF0094840 65 SVRKIVK|ID 0.065 . NF0094840 82 GLTADAR|VL 0.079 . NF0094840 87 ARVLINK|AR 0.064 . NF0094840 89 VLINKAR|LH 0.094 . NF0094840 110 SIDYITR|YI 0.106 . NF0094840 118 IAQVQQK|YT 0.087 . NF0094840 126 TQSGGVR|PF 0.120 . NF0094840 158 GTFSSWK|AN 0.074 . NF0094840 164 KANTCGR|NS 0.097 . NF0094840 167 TCGRNSK|TV 0.172 . NF0094840 170 RNSKTVK|EF 0.069 . NF0094840 175 VKEFLEK|NY 0.063 . NF0094840 193 PADDESR|AV 0.120 . NF0094840 196 DESRAVK|LA 0.206 . NF0094840 200 AVKLAIK|AL 0.061 . NF0094840 211 VVESGGK|NI 0.057 . NF0094840 219 IEVAVLK|YK 0.070 . NF0094840 221 VAVLKYK|EP 0.061 . NF0094840 225 KYKEPLR|FL 0.118 . NF0094840 241 YVDDIEK|QK 0.054 . NF0094840 243 DDIEKQK|KL 0.066 . NF0094840 244 DIEKQKK|LE 0.100 . NF0094840 250 KLEEESK|KQ 0.063 . NF0094840 251 LEEESKK|QK 0.098 . NF0094840 253 EESKKQK|KD 0.078 . NF0094840 254 ESKKQKK|DR 0.223 . NF0094840 256 KKQKKDR|SQ 0.298 . ____________________________^_________________

Fasta :-
>NF0094840 ATGTCCCGCTACGACAGAGCCATCACAGTCTTCTCGCCAAATGGCCATCTCTTCCAAGTC GAATATGCCATGGAAGCTGTGAGAAAGGGAAGTACAGCAGTGGGAGTGAAAGGAAATAAT GTTATTGTTTTAGCTGTTGAAAGAAAGGCAGCTGCAAAATTGCAAGAAACTCGTTCCGTA CGAAAGATTGTGAAAATAGATGATCATTGTGCTTTGGCATTTGCCGGATTAACAGCAGAT GCTCGTGTTTTGATCAACAAGGCTAGATTACACGCTCAAAGTTATGCTTTACAATTTGAA GATCAAGTTTCAATTGATTACATTACACGATACATTGCTCAAGTTCAACAGAAATACACT CAAAGTGGTGGTGTTCGTCCATTCGGTATTAGTACAATTATTGCAGGATTTGAACCAAAT GGAACACCAACACTTTCTCAAACGGACCCATCCGGAACATTCTCATCTTGGAAGGCCAAC ACTTGTGGAAGAAACTCAAAAACCGTAAAAGAATTTCTTGAAAAGAATTATGATAATGAC ATTTTTGGAACAGAGGGTCCTGCTGATGATGAATCTAGGGCTGTTAAGCTTGCCATCAAG GCTCTTCTTGAAGTCGTAGAAAGTGGAGGTAAAAATATTGAGGTTGCTGTCTTAAAGTAC AAGGAACCTCTTCGCTTTTTGACTGACGAGGAAGTTGGAGCCTATGTTGACGACATTGAA AAGCAAAAGAAACTTGAGGAAGAGAGTAAGAAACAAAAGAAGGACAGGTCACAACAACAG CAATAA
Download Fasta

Fasta :-

MSRYDRAITVFSPNGHLFQVEYAMEAVRKGSTAVGVKGNNVIVLAVERKAAAKLQETRSV RKIVKIDDHCALAFAGLTADARVLINKARLHAQSYALQFEDQVSIDYITRYIAQVQQKYT QSGGVRPFGISTIIAGFEPNGTPTLSQTDPSGTFSSWKANTCGRNSKTVKEFLEKNYDND IFGTEGPADDESRAVKLAIKALLEVVESGGKNIEVAVLKYKEPLRFLTDEEVGAYVDDIE KQKKLEEESKKQKKDRSQQQQ

Proteasome subunits

title: active site
coordinates: S31,E47,K49,K62,R164

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0094840	T	142	0.592	0.258	NF0094840	T	144	0.573	0.043	NF0094840	T	148	0.547	0.094	NF0094840	T	153	0.538	0.073

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	NF0094840	T	142	0.592	0.258	NF0094840	T	144	0.573	0.043	NF0094840	T	148	0.547	0.094	NF0094840	T	153	0.538	0.073

	ID	Site	Peptide	Score	Method
	NF0094840	146 S	TPTLSQTDP	0.992	unsp

NF0094840 | proteasome subunit alpha type 7

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs: GO:0005839 GO:0019773

Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex

Computed_GO_Function_IDs: GO:0004175 GO:0004298

Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603 GO:0006511

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India