NF0096880 | 20s proteasome beta subunit family protein

_IDPredictionOTHERSPmTPCS_Position
NF0096880OTHER0.9009310.0020340.097035
No Results

  • Fasta :-

    >NF0096880 MLSLPSSKYSLRAGSSLSKVLNTDFSQISIGHHDEEEDLSIMNPMGDLSFGLNGQMGFTL PPGMNNAGFLSQKEKLEKTYAKGTTTLGFVFNRGIVIAVDSRASMGNYISSQNVKKVIEI NPYLLGTMAGGAADCQFWERYLGMQCRLYELRNKRRISVAAASKLLSNIVYQYKNYGLSM GTMIAGWDHTGPNLFMVDNDGTRLKGTRFSVGSGSLYAYGVLDQGYRPDLTEEEACELGR RAIYHATHRDAYSGGIINVYLIRSDGWTKISSTDMNDLHYGKYALEKGAITPPLLLDSN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0096880.fa Sequence name : NF0096880 Sequence length : 299 VALUES OF COMPUTED PARAMETERS Coef20 : 4.457 CoefTot : 0.650 ChDiff : 1 ZoneTo : 23 KR : 3 DE : 0 CleavSite : 14 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.124 1.265 0.079 0.521 MesoH : -0.459 0.127 -0.388 0.174 MuHd_075 : 20.009 13.426 5.951 3.484 MuHd_095 : 31.544 16.769 8.669 6.859 MuHd_100 : 38.857 22.141 11.203 8.232 MuHd_105 : 39.020 25.019 11.549 8.417 Hmax_075 : 10.600 5.600 1.013 2.580 Hmax_095 : 8.838 10.700 1.610 3.820 Hmax_100 : 12.000 11.600 2.156 4.040 Hmax_105 : 12.367 11.600 2.204 4.040 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3556 0.6444 DFMC : 0.2908 0.7092 This protein is probably imported in chloroplast. f(Ser) = 0.3043 f(Arg) = 0.0435 CMi = 2.32558 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 299 NF0096880 MLSLPSSKYSLRAGSSLSKVLNTDFSQISIGHHDEEEDLSIMNPMGDLSFGLNGQMGFTLPPGMNNAGFLSQKEKLEKTY 80 AKGTTTLGFVFNRGIVIAVDSRASMGNYISSQNVKKVIEINPYLLGTMAGGAADCQFWERYLGMQCRLYELRNKRRISVA 160 AASKLLSNIVYQYKNYGLSMGTMIAGWDHTGPNLFMVDNDGTRLKGTRFSVGSGSLYAYGVLDQGYRPDLTEEEACELGR 240 RAIYHATHRDAYSGGIINVYLIRSDGWTKISSTDMNDLHYGKYALEKGAITPPLLLDSN 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0096880 8 LSLPSSK|YS 0.067 . NF0096880 12 SSKYSLR|AG 0.086 . NF0096880 19 AGSSLSK|VL 0.066 . NF0096880 73 AGFLSQK|EK 0.058 . NF0096880 75 FLSQKEK|LE 0.075 . NF0096880 78 QKEKLEK|TY 0.071 . NF0096880 82 LEKTYAK|GT 0.087 . NF0096880 93 LGFVFNR|GI 0.114 . NF0096880 102 VIAVDSR|AS 0.085 . NF0096880 115 ISSQNVK|KV 0.097 . NF0096880 116 SSQNVKK|VI 0.133 . NF0096880 140 DCQFWER|YL 0.116 . NF0096880 147 YLGMQCR|LY 0.083 . NF0096880 152 CRLYELR|NK 0.078 . NF0096880 154 LYELRNK|RR 0.054 . NF0096880 155 YELRNKR|RI 0.456 . NF0096880 156 ELRNKRR|IS 0.146 . NF0096880 164 SVAAASK|LL 0.067 . NF0096880 174 NIVYQYK|NY 0.074 . NF0096880 203 VDNDGTR|LK 0.084 . NF0096880 205 NDGTRLK|GT 0.072 . NF0096880 208 TRLKGTR|FS 0.108 . NF0096880 227 VLDQGYR|PD 0.073 . NF0096880 240 EACELGR|RA 0.085 . NF0096880 241 ACELGRR|AI 0.127 . NF0096880 249 IYHATHR|DA 0.153 . NF0096880 263 INVYLIR|SD 0.124 . NF0096880 269 RSDGWTK|IS 0.067 . NF0096880 282 NDLHYGK|YA 0.068 . NF0096880 287 GKYALEK|GA 0.073 . ____________________________^_________________

  • Fasta :-

    >NF0096880 ATGCTCTCACTGCCTTCCTCGAAATACTCTCTCCGTGCGGGATCATCACTTTCAAAAGTC TTGAATACAGATTTCTCCCAAATTTCTATTGGACATCATGATGAAGAGGAAGATCTTTCA ATCATGAATCCTATGGGTGATCTTTCTTTTGGCTTGAATGGTCAAATGGGATTTACTCTT CCTCCCGGTATGAATAATGCTGGTTTTCTCTCTCAAAAAGAAAAATTAGAAAAAACCTAT GCCAAGGGTACCACCACTTTGGGATTTGTATTTAATCGTGGTATTGTCATTGCTGTTGAT TCTCGTGCATCTATGGGAAATTACATTTCATCTCAAAATGTTAAGAAAGTCATTGAAATT AATCCCTATCTTCTTGGAACGATGGCTGGTGGTGCTGCTGATTGTCAATTTTGGGAACGT TATTTGGGTATGCAATGTCGTTTATATGAATTGAGAAATAAGAGACGTATTTCTGTGGCT GCTGCATCGAAATTGTTGAGTAATATTGTCTATCAATATAAGAATTATGGTCTCTCAATG GGTACCATGATTGCTGGATGGGATCACACAGGACCTAATCTATTTATGGTCGACAATGAT GGCACTCGTTTGAAAGGAACAAGATTTTCTGTAGGTTCAGGATCATTGTATGCCTATGGT GTTTTGGATCAAGGCTATCGTCCAGATTTAACAGAAGAAGAAGCTTGTGAATTGGGTCGT CGTGCCATTTATCATGCCACTCACCGTGATGCCTATTCAGGAGGTATCATTAATGTCTAT TTGATTCGTTCGGATGGATGGACCAAGATTTCGAGTACAGATATGAATGATTTGCATTAT GGAAAGTATGCCCTTGAGAAGGGTGCCATTACTCCTCCCTTGTTGTTGGATTCGAATTGA
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  • Fasta :-

    MLSLPSSKYSLRAGSSLSKVLNTDFSQISIGHHDEEEDLSIMNPMGDLSFGLNGQMGFTL PPGMNNAGFLSQKEKLEKTYAKGTTTLGFVFNRGIVIAVDSRASMGNYISSQNVKKVIEI NPYLLGTMAGGAADCQFWERYLGMQCRLYELRNKRRISVAAASKLLSNIVYQYKNYGLSM GTMIAGWDHTGPNLFMVDNDGTRLKGTRFSVGSGSLYAYGVLDQGYRPDLTEEEACELGR RAIYHATHRDAYSGGIINVYLIRSDGWTKISSTDMNDLHYGKYALEKGAITPPLLLDSN

  • title: active site
  • coordinates: T84,D100,R102,K116,S213,D250,S253,G254
No Results
No Results
IDSitePeptideScoreMethod
NF0096880158 SKRRISVAAA0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India