NF0118280 | mitochondrial inner membrane protease subunit

UniProt_ID:

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs:
Computed_GO_Functions:
Computed_GO_Process_IDs:
Computed_GO_Processes:
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	NF0118280	SP	0.362274	0.564253	0.073472	CS pos: 24-25. ASC-FI. Pr: 0.7100

No Results

Fasta :-
>NF0118280 MLQRVKGVLYPTLFIASTLYGASCFIFDRYWFGCVNGASMKPTLNSEWGLTGPASSRKSS SISRDWILIKRVKDHKNELDINDIVVFVSPEEPRTTAIKRVKALPGQVYQPSRRDTDGHA ASGKYIPKGHVWVEGDNAVSSVDSNMYGPIPMGLIRGKAVCVIYPKFKWL
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0118280.fa Sequence name : NF0118280 Sequence length : 170 VALUES OF COMPUTED PARAMETERS Coef20 : 4.258 CoefTot : -1.007 ChDiff : 9 ZoneTo : 64 KR : 7 DE : 2 CleavSite : 59 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.871 1.459 0.337 0.619 MesoH : -0.560 0.104 -0.361 0.146 MuHd_075 : 23.786 18.084 8.702 5.715 MuHd_095 : 24.318 17.489 6.262 5.246 MuHd_100 : 28.492 21.555 6.470 5.192 MuHd_105 : 34.537 23.208 8.206 6.339 Hmax_075 : 14.300 20.767 3.245 4.930 Hmax_095 : 10.400 15.925 3.589 5.075 Hmax_100 : 9.000 21.600 4.033 2.100 Hmax_105 : 9.567 23.600 1.090 3.278 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6743 0.3257 DFMC : 0.4514 0.5486 This protein is probably imported in mitochondria. f(Ser) = 0.1563 f(Arg) = 0.0625 CMi = 0.99206 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 170 NF0118280 MLQRVKGVLYPTLFIASTLYGASCFIFDRYWFGCVNGASMKPTLNSEWGLTGPASSRKSSSISRDWILIKRVKDHKNELD 80 INDIVVFVSPEEPRTTAIKRVKALPGQVYQPSRRDTDGHAASGKYIPKGHVWVEGDNAVSSVDSNMYGPIPMGLIRGKAV 160 CVIYPKFKWL 240 ................................................................................ 80 ................................................................................ 160 .......... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0118280 4 ---MLQR|VK 0.090 . NF0118280 6 -MLQRVK|GV 0.058 . NF0118280 29 SCFIFDR|YW 0.108 . NF0118280 41 VNGASMK|PT 0.071 . NF0118280 57 TGPASSR|KS 0.084 . NF0118280 58 GPASSRK|SS 0.275 . NF0118280 64 KSSSISR|DW 0.122 . NF0118280 70 RDWILIK|RV 0.074 . NF0118280 71 DWILIKR|VK 0.123 . NF0118280 73 ILIKRVK|DH 0.069 . NF0118280 76 KRVKDHK|NE 0.064 . NF0118280 94 VSPEEPR|TT 0.084 . NF0118280 99 PRTTAIK|RV 0.076 . NF0118280 100 RTTAIKR|VK 0.110 . NF0118280 102 TAIKRVK|AL 0.076 . NF0118280 113 QVYQPSR|RD 0.097 . NF0118280 114 VYQPSRR|DT 0.255 . NF0118280 124 GHAASGK|YI 0.094 . NF0118280 128 SGKYIPK|GH 0.074 . NF0118280 156 IPMGLIR|GK 0.089 . NF0118280 158 MGLIRGK|AV 0.090 . NF0118280 166 VCVIYPK|FK 0.061 . NF0118280 168 VIYPKFK|WL 0.074 . ____________________________^_________________

Fasta :-
>NF0118280 ATGCTGCAGCGAGTGAAGGGAGTTTTATATCCGACACTCTTCATCGCGTCCACGCTTTAT GGAGCTTCTTGTTTTATATTTGATAGATATTGGTTTGGATGTGTGAATGGAGCCTCCATG AAACCAACACTCAACTCGGAATGGGGTCTGACAGGTCCAGCCTCTTCTCGTAAATCATCA TCCATTAGTCGGGATTGGATTTTAATTAAACGAGTCAAAGACCATAAGAATGAACTCGAC ATCAATGATATTGTTGTATTTGTTTCGCCCGAGGAGCCACGAACAACTGCAATTAAAAGA GTAAAAGCTCTTCCAGGACAAGTGTATCAGCCTTCGAGAAGGGATACTGATGGTCATGCA GCAAGTGGGAAATACATTCCGAAAGGTCATGTGTGGGTCGAAGGAGATAATGCCGTGTCG AGTGTTGATTCTAACATGTATGGACCAATTCCAATGGGTTTAATTCGTGGAAAGGCTGTT TGTGTTATTTATCCAAAATTTAAATGGTTGTAA
Download Fasta

Fasta :-

MLQRVKGVLYPTLFIASTLYGASCFIFDRYWFGCVNGASMKPTLNSEWGLTGPASSRKSS SISRDWILIKRVKDHKNELDINDIVVFVSPEEPRTTAIKRVKALPGQVYQPSRRDTDGHA ASGKYIPKGHVWVEGDNAVSSVDSNMYGPIPMGLIRGKAVCVIYPKFKWL

No Results

title: Catalytic site
coordinates: S39,K99

	ID	Site	Position	Gscore	Iscore
	NF0118280	T	51	0.528	0.071

	ID	Site	Position	Gscore	Iscore
	NF0118280	T	51	0.528	0.071

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	NF0118280	60 S	SRKSSSISR	0.993	unsp	NF0118280	60 S	SRKSSSISR	0.993	unsp	NF0118280	60 S	SRKSSSISR	0.993	unsp	NF0118280	89 S	VVFVSPEEP	0.998	unsp	NF0118280	112 S	VYQPSRRDT	0.994	unsp	NF0118280	56 S	GPASSRKSS	0.995	unsp	NF0118280	59 S	SSRKSSSIS	0.996	unsp

NF0118280 | mitochondrial inner membrane protease subunit

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs:

Computed_GO_Functions:

Computed_GO_Process_IDs:

Computed_GO_Processes:

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India