NF0123230 | proteasome subunit beta type-3-like

_IDPredictionOTHERSPmTPCS_Position
NF0123230OTHER0.9979850.0012790.000735
No Results

  • Fasta :-

    >NF0123230 MSILEYNGGGVVAMTGKNCVAIAADTRYGIRQQTVGTDMQKAFKIHDKCFIGMTGLATDI QTFHEKLKFRMNLYNLKEERLIKPSSLSNLVSNMLYEKRFGPWFIEPVIAGLEGDENKPF ICAQDLIGAPCYTDNFVVSGTCSEALYGMCESLYRPNMEPDDLFEVVSQCLLAAVDRDCI SGWGAVVHVITPDKIITKRLKVRQD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0123230.fa Sequence name : NF0123230 Sequence length : 205 VALUES OF COMPUTED PARAMETERS Coef20 : 3.456 CoefTot : -0.973 ChDiff : -3 ZoneTo : 24 KR : 1 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.841 1.118 0.132 0.493 MesoH : -0.536 0.417 -0.230 0.236 MuHd_075 : 16.212 6.228 5.805 2.190 MuHd_095 : 16.660 15.254 6.601 3.436 MuHd_100 : 16.390 12.533 7.539 3.380 MuHd_105 : 16.172 10.807 7.551 3.536 Hmax_075 : 13.767 13.533 4.191 3.990 Hmax_095 : 13.825 13.200 4.108 4.500 Hmax_100 : 14.100 16.100 4.563 4.940 Hmax_105 : 12.717 11.500 4.358 4.630 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9895 0.0105 DFMC : 0.9812 0.0188
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 205 NF0123230 MSILEYNGGGVVAMTGKNCVAIAADTRYGIRQQTVGTDMQKAFKIHDKCFIGMTGLATDIQTFHEKLKFRMNLYNLKEER 80 LIKPSSLSNLVSNMLYEKRFGPWFIEPVIAGLEGDENKPFICAQDLIGAPCYTDNFVVSGTCSEALYGMCESLYRPNMEP 160 DDLFEVVSQCLLAAVDRDCISGWGAVVHVITPDKIITKRLKVRQD 240 ................................................................................ 80 ................................................................................ 160 ............................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0123230 17 VVAMTGK|NC 0.060 . NF0123230 27 AIAADTR|YG 0.092 . NF0123230 31 DTRYGIR|QQ 0.092 . NF0123230 41 VGTDMQK|AF 0.060 . NF0123230 44 DMQKAFK|IH 0.067 . NF0123230 48 AFKIHDK|CF 0.069 . NF0123230 66 IQTFHEK|LK 0.060 . NF0123230 68 TFHEKLK|FR 0.068 . NF0123230 70 HEKLKFR|MN 0.105 . NF0123230 77 MNLYNLK|EE 0.058 . NF0123230 80 YNLKEER|LI 0.081 . NF0123230 83 KEERLIK|PS 0.109 . NF0123230 98 SNMLYEK|RF 0.064 . NF0123230 99 NMLYEKR|FG 0.124 . NF0123230 118 LEGDENK|PF 0.066 . NF0123230 155 MCESLYR|PN 0.077 . NF0123230 177 LLAAVDR|DC 0.123 . NF0123230 194 HVITPDK|II 0.065 . NF0123230 198 PDKIITK|RL 0.059 . NF0123230 199 DKIITKR|LK 0.131 . NF0123230 201 IITKRLK|VR 0.058 . NF0123230 203 TKRLKVR|QD 0.121 . ____________________________^_________________

  • Fasta :-

    >NF0123230 ATGAGCATTCTCGAGTATAATGGTGGTGGTGTAGTGGCAATGACAGGCAAGAATTGTGTG GCCATTGCTGCCGACACAAGATATGGTATTAGGCAACAAACTGTAGGCACAGATATGCAA AAAGCTTTCAAAATCCATGATAAATGTTTCATAGGAATGACCGGATTAGCAACTGATATT CAAACTTTTCATGAAAAATTGAAATTTAGAATGAATCTGTATAATCTTAAAGAGGAGAGA CTCATCAAGCCAAGTAGCTTGTCTAATCTTGTATCAAACATGCTTTATGAAAAGAGATTC GGACCATGGTTCATTGAACCAGTCATTGCTGGTCTTGAAGGAGACGAAAATAAGCCATTT ATCTGTGCACAGGATTTGATTGGTGCTCCATGTTACACAGACAATTTTGTGGTCTCTGGT ACTTGCAGCGAAGCACTTTACGGAATGTGTGAATCATTGTACAGACCAAACATGGAGCCA GATGATCTTTTTGAAGTAGTTTCTCAATGTCTTTTGGCAGCTGTTGACAGAGATTGTATT TCTGGTTGGGGTGCTGTTGTTCATGTTATTACGCCTGACAAGATTATCACCAAGAGGTTA AAAGTGAGACAAGACTAA
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  • Fasta :-

    MSILEYNGGGVVAMTGKNCVAIAADTRYGIRQQTVGTDMQKAFKIHDKCFIGMTGLATDI QTFHEKLKFRMNLYNLKEERLIKPSSLSNLVSNMLYEKRFGPWFIEPVIAGLEGDENKPF ICAQDLIGAPCYTDNFVVSGTCSEALYGMCESLYRPNMEPDDLFEVVSQCLLAAVDRDCI SGWGAVVHVITPDKIITKRLKVRQD

  • title: active site
  • coordinates: G9,D25,R27,K41,T141,D178,S181,G182
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India