NF0123260 | ubiquitin carboxyl-terminal hydrolase 3-like

_IDPredictionOTHERSPmTPCS_Position
NF0123260OTHER0.9999770.0000030.000020
No Results

  • Fasta :-

    >NF0123260 MGNVLQNSPPNSNGFGTQQNKRSSSQLKLDDLNTGNEKYFGLENFGNTCYANSVLQALYF CKPFRYRILEYYENNKLQQQPDLKNSNLLHSLSDLFYQLFNQKKNSGHLAPKNFIQRLRA DNELFRSLMQQDAQEFLNFVLNHVVEILQREDSNRVENEEQNIPSTSSRGSEMDTSSDIQ EIHSENSQESKKVKTFIHEIFEGKLINETRCIMCENVTSREESFFDISIDVQQFSSITQC LKNFSSMQILKSNNKFYCDHCCSHQEAQTRMTIKQQPQVLAIQLKRFKYMNNTFKKLSYR VTFPFDIKLPNLSEDETEKTYRLFAAVVHIGSGPNCGHYKCIVRSEDQWILFDDDRVTMV DEDYIRSTYGFPYDETSSFSGITETCYILFYSSDV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0123260.fa Sequence name : NF0123260 Sequence length : 395 VALUES OF COMPUTED PARAMETERS Coef20 : 2.836 CoefTot : -1.711 ChDiff : -9 ZoneTo : 29 KR : 3 DE : 0 CleavSite : 24 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.929 0.688 0.085 0.441 MesoH : -1.185 -0.140 -0.476 0.090 MuHd_075 : 21.002 15.880 5.506 5.849 MuHd_095 : 22.620 18.581 7.334 4.382 MuHd_100 : 22.647 19.186 7.119 4.634 MuHd_105 : 18.941 16.629 6.113 3.998 Hmax_075 : 3.500 8.400 -1.757 2.532 Hmax_095 : -0.200 10.700 1.829 0.790 Hmax_100 : 14.700 10.700 1.829 4.160 Hmax_105 : 11.900 3.500 -1.293 3.733 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8282 0.1718 DFMC : 0.7443 0.2557
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 395 NF0123260 MGNVLQNSPPNSNGFGTQQNKRSSSQLKLDDLNTGNEKYFGLENFGNTCYANSVLQALYFCKPFRYRILEYYENNKLQQQ 80 PDLKNSNLLHSLSDLFYQLFNQKKNSGHLAPKNFIQRLRADNELFRSLMQQDAQEFLNFVLNHVVEILQREDSNRVENEE 160 QNIPSTSSRGSEMDTSSDIQEIHSENSQESKKVKTFIHEIFEGKLINETRCIMCENVTSREESFFDISIDVQQFSSITQC 240 LKNFSSMQILKSNNKFYCDHCCSHQEAQTRMTIKQQPQVLAIQLKRFKYMNNTFKKLSYRVTFPFDIKLPNLSEDETEKT 320 YRLFAAVVHIGSGPNCGHYKCIVRSEDQWILFDDDRVTMVDEDYIRSTYGFPYDETSSFSGITETCYILFYSSDV 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ........................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0123260 21 FGTQQNK|RS 0.060 . NF0123260 22 GTQQNKR|SS 0.326 . NF0123260 28 RSSSQLK|LD 0.073 . NF0123260 38 LNTGNEK|YF 0.065 . NF0123260 62 QALYFCK|PF 0.061 . NF0123260 65 YFCKPFR|YR 0.078 . NF0123260 67 CKPFRYR|IL 0.112 . NF0123260 76 EYYENNK|LQ 0.052 . NF0123260 84 QQQPDLK|NS 0.055 . NF0123260 103 YQLFNQK|KN 0.061 . NF0123260 104 QLFNQKK|NS 0.105 . NF0123260 112 SGHLAPK|NF 0.068 . NF0123260 117 PKNFIQR|LR 0.083 . NF0123260 119 NFIQRLR|AD 0.095 . NF0123260 126 ADNELFR|SL 0.180 . NF0123260 150 VVEILQR|ED 0.076 . NF0123260 155 QREDSNR|VE 0.099 . NF0123260 169 IPSTSSR|GS 0.156 . NF0123260 191 ENSQESK|KV 0.097 . NF0123260 192 NSQESKK|VK 0.097 . NF0123260 194 QESKKVK|TF 0.093 . NF0123260 204 HEIFEGK|LI 0.065 . NF0123260 210 KLINETR|CI 0.120 . NF0123260 220 CENVTSR|EE 0.086 . NF0123260 242 SITQCLK|NF 0.059 . NF0123260 251 SSMQILK|SN 0.082 . NF0123260 255 ILKSNNK|FY 0.067 . NF0123260 270 HQEAQTR|MT 0.167 . NF0123260 274 QTRMTIK|QQ 0.077 . NF0123260 285 VLAIQLK|RF 0.066 . NF0123260 286 LAIQLKR|FK 0.173 . NF0123260 288 IQLKRFK|YM 0.060 . NF0123260 295 YMNNTFK|KL 0.070 . NF0123260 296 MNNTFKK|LS 0.133 . NF0123260 300 FKKLSYR|VT 0.087 . NF0123260 308 TFPFDIK|LP 0.058 . NF0123260 319 SEDETEK|TY 0.055 . NF0123260 322 ETEKTYR|LF 0.098 . NF0123260 340 PNCGHYK|CI 0.085 . NF0123260 344 HYKCIVR|SE 0.111 . NF0123260 356 ILFDDDR|VT 0.086 . NF0123260 366 VDEDYIR|ST 0.101 . ____________________________^_________________

  • Fasta :-

    >NF0123260 ATGGGGAACGTTCTCCAAAATTCACCCCCCAACAGCAACGGGTTCGGAACACAGCAAAAC AAACGTTCATCTTCACAACTCAAATTGGACGATTTGAATACTGGTAATGAAAAATACTTT GGGTTGGAGAATTTCGGAAACACGTGCTATGCCAACAGTGTTCTGCAAGCGTTATATTTC TGCAAACCATTCCGATATCGAATTTTGGAATATTATGAAAACAACAAACTACAACAACAA CCAGATTTAAAGAATTCTAATTTATTGCATTCACTCTCTGATTTGTTTTACCAATTGTTT AATCAAAAGAAAAATAGTGGACATCTCGCTCCCAAGAACTTTATTCAGAGGCTACGTGCT GACAATGAACTGTTTAGAAGTTTGATGCAGCAAGATGCACAAGAGTTTTTGAATTTTGTT CTGAATCATGTAGTTGAGATTTTACAAAGAGAAGACTCTAATAGAGTTGAGAATGAGGAA CAAAATATTCCATCTACCTCTTCTCGTGGCTCGGAAATGGATACAAGTAGTGACATTCAA GAAATACATTCAGAAAATTCACAGGAATCAAAGAAGGTGAAAACATTTATTCATGAAATA TTTGAAGGAAAATTAATTAATGAAACAAGATGTATCATGTGTGAAAATGTGACAAGTAGA GAAGAAAGTTTCTTTGACATTAGTATAGATGTACAACAATTTTCGTCTATTACTCAATGT CTTAAAAACTTTAGTAGCATGCAAATTCTAAAATCAAACAACAAATTTTACTGTGATCAT TGTTGCTCGCATCAGGAAGCCCAAACAAGAATGACTATCAAACAACAACCACAAGTTCTT GCTATACAGCTTAAAAGGTTCAAATATATGAACAACACTTTCAAGAAGCTTTCTTATCGT GTGACCTTTCCTTTCGATATTAAGCTCCCAAATTTATCCGAGGATGAAACAGAAAAAACA TACAGATTATTTGCAGCAGTTGTTCATATTGGTTCTGGTCCAAATTGTGGCCACTACAAG TGTATTGTGAGGTCTGAAGATCAATGGATTCTGTTTGATGATGATCGAGTGACCATGGTT GATGAAGATTATATTAGGTCTACTTATGGATTTCCTTATGATGAGACGTCTTCATTTAGT GGAATTACCGAGACATGTTATATATTGTTTTACAGCTCGGACGTGTAA
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  • Fasta :-

    MGNVLQNSPPNSNGFGTQQNKRSSSQLKLDDLNTGNEKYFGLENFGNTCYANSVLQALYF CKPFRYRILEYYENNKLQQQPDLKNSNLLHSLSDLFYQLFNQKKNSGHLAPKNFIQRLRA DNELFRSLMQQDAQEFLNFVLNHVVEILQREDSNRVENEEQNIPSTSSRGSEMDTSSDIQ EIHSENSQESKKVKTFIHEIFEGKLINETRCIMCENVTSREESFFDISIDVQQFSSITQC LKNFSSMQILKSNNKFYCDHCCSHQEAQTRMTIKQQPQVLAIQLKRFKYMNNTFKKLSYR VTFPFDIKLPNLSEDETEKTYRLFAAVVHIGSGPNCGHYKCIVRSEDQWILFDDDRVTMV DEDYIRSTYGFPYDETSSFSGITETCYILFYSSDV

  • title: Active Site
  • coordinates: N44,C49,H338,D354
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
NF0123260187 SHSENSQESK0.991unspNF0123260187 SHSENSQESK0.991unspNF0123260187 SHSENSQESK0.991unspNF0123260223 SSREESFFDI0.997unspNF0123260298 SFKKLSYRVT0.992unspNF0123260313 SLPNLSEDET0.994unspNF012326091 SNLLHSLSDL0.994unspNF0123260171 SSSRGSEMDT0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India