NF0126930 | proteasome subunit alpha type-4-like

_IDPredictionOTHERSPmTPCS_Position
NF0126930OTHER0.9998570.0000650.000079
No Results

  • Fasta :-

    >NF0126930 MSRRYDNRTTTFSPEGRLYQVEYAMEAISHAGAALGIVATNGIVLAAEKKITSKLLDNER KTEKMYRLDNHIGCAVAGITADANILINSARLHAQRYQFMYQEPIPVEQLVKTLCDSKQS YTQFGGMRPFGVSFLYAGWDKQYGYQLYHSDPSGNYGGWKATAIGANNQGAQSILKQEWK EDLTIEGAKKLAVKVMTKTMDSTSLSSEKLEFVTFTRDESGQVVYTVLPDKEVDQYLKEA QEEKEREQQQQAQKQNI
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/NF0126930.fa Sequence name : NF0126930 Sequence length : 257 VALUES OF COMPUTED PARAMETERS Coef20 : 4.114 CoefTot : 0.225 ChDiff : -1 ZoneTo : 5 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.529 1.788 0.273 0.678 MesoH : -0.755 0.202 -0.433 0.144 MuHd_075 : 24.818 4.901 4.448 6.266 MuHd_095 : 19.371 6.287 4.673 2.928 MuHd_100 : 23.166 9.528 5.401 4.814 MuHd_105 : 24.111 11.814 5.539 6.077 Hmax_075 : -3.850 -5.833 -3.651 0.210 Hmax_095 : -2.187 -3.325 -2.391 -0.289 Hmax_100 : 9.800 0.700 0.016 2.170 Hmax_105 : -2.450 -3.967 -2.377 1.132 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8780 0.1220 DFMC : 0.8134 0.1866
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 257 NF0126930 MSRRYDNRTTTFSPEGRLYQVEYAMEAISHAGAALGIVATNGIVLAAEKKITSKLLDNERKTEKMYRLDNHIGCAVAGIT 80 ADANILINSARLHAQRYQFMYQEPIPVEQLVKTLCDSKQSYTQFGGMRPFGVSFLYAGWDKQYGYQLYHSDPSGNYGGWK 160 ATAIGANNQGAQSILKQEWKEDLTIEGAKKLAVKVMTKTMDSTSLSSEKLEFVTFTRDESGQVVYTVLPDKEVDQYLKEA 240 QEEKEREQQQQAQKQNI 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ NF0126930 3 ----MSR|RY 0.086 . NF0126930 4 ---MSRR|YD 0.141 . NF0126930 8 SRRYDNR|TT 0.117 . NF0126930 17 TFSPEGR|LY 0.107 . NF0126930 49 IVLAAEK|KI 0.059 . NF0126930 50 VLAAEKK|IT 0.124 . NF0126930 54 EKKITSK|LL 0.071 . NF0126930 60 KLLDNER|KT 0.081 . NF0126930 61 LLDNERK|TE 0.069 . NF0126930 64 NERKTEK|MY 0.063 . NF0126930 67 KTEKMYR|LD 0.098 . NF0126930 91 ILINSAR|LH 0.093 . NF0126930 96 ARLHAQR|YQ 0.101 . NF0126930 112 PVEQLVK|TL 0.061 . NF0126930 118 KTLCDSK|QS 0.065 . NF0126930 128 TQFGGMR|PF 0.104 . NF0126930 141 LYAGWDK|QY 0.077 . NF0126930 160 GNYGGWK|AT 0.073 . NF0126930 176 GAQSILK|QE 0.064 . NF0126930 180 ILKQEWK|ED 0.067 . NF0126930 189 LTIEGAK|KL 0.066 . NF0126930 190 TIEGAKK|LA 0.102 . NF0126930 194 AKKLAVK|VM 0.062 . NF0126930 198 AVKVMTK|TM 0.057 . NF0126930 209 TSLSSEK|LE 0.058 . NF0126930 217 EFVTFTR|DE 0.101 . NF0126930 231 YTVLPDK|EV 0.084 . NF0126930 238 EVDQYLK|EA 0.058 . NF0126930 244 KEAQEEK|ER 0.074 . NF0126930 246 AQEEKER|EQ 0.079 . NF0126930 254 QQQQAQK|QN 0.066 . ____________________________^_________________

  • Fasta :-

    >NF0126930 ATGAGCAGAAGATACGACAACCGCACGACCACCTTCTCTCCCGAAGGAAGATTGTATCAA GTGGAATATGCGATGGAAGCCATCAGCCATGCAGGAGCCGCACTCGGTATTGTAGCTACG AATGGTATCGTGTTGGCAGCTGAAAAGAAAATTACTTCCAAGCTTCTTGATAATGAAAGG AAAACGGAAAAGATGTACCGATTGGACAATCATATCGGATGTGCTGTTGCTGGTATTACA GCTGATGCCAATATTTTGATCAACTCGGCTCGTCTTCATGCTCAACGTTATCAATTCATG TATCAAGAACCAATTCCTGTGGAACAACTTGTAAAAACTCTCTGTGATTCGAAACAAAGT TACACTCAATTTGGTGGTATGAGACCTTTTGGTGTCAGTTTTCTGTATGCTGGTTGGGAT AAACAATATGGATATCAATTGTATCATTCTGATCCTTCAGGAAATTATGGTGGATGGAAA GCAACAGCAATCGGAGCAAATAATCAAGGCGCTCAATCCATCCTAAAACAAGAATGGAAA GAAGATTTAACCATTGAAGGTGCCAAAAAATTGGCAGTCAAGGTTATGACCAAGACCATG GATAGCACAAGTTTATCAAGTGAAAAGCTTGAATTTGTCACATTCACAAGAGACGAATCG GGTCAAGTGGTTTACACAGTACTTCCAGATAAAGAGGTGGATCAATATTTGAAGGAAGCT CAGGAAGAGAAGGAGAGAGAACAACAACAACAGGCACAAAAGCAAAATATTTAA
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  • Fasta :-

    MSRRYDNRTTTFSPEGRLYQVEYAMEAISHAGAALGIVATNGIVLAAEKKITSKLLDNER KTEKMYRLDNHIGCAVAGITADANILINSARLHAQRYQFMYQEPIPVEQLVKTLCDSKQS YTQFGGMRPFGVSFLYAGWDKQYGYQLYHSDPSGNYGGWKATAIGANNQGAQSILKQEWK EDLTIEGAKKLAVKVMTKTMDSTSLSSEKLEFVTFTRDESGQVVYTVLPDKEVDQYLKEA QEEKEREQQQQAQKQNI

  • title: active site
  • coordinates: G32,E48,K50,K64,A166
No Results
No Results
IDSitePeptideScoreMethod
NF012693013 STTTFSPEGR0.99unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India