Warning : mysqli_connect(): (HY000/1045): Access denied for user 'root'@'localhost' (using password: YES) in /opt/lampp/htdocs/ProtPathDB/database/db_connect.php on line 2
Failed to connect to MySQL: Access denied for user 'root'@'localhost' (using password: YES)
ProtPathDB
Targetp
Signalp
Mitoprot
MitoProt II - v1.101
File : /home/rajan/sadaf/4480_mitoprot/test/NF0130780.fa
Sequence name : NF0130780
Sequence length : 540
VALUES OF COMPUTED PARAMETERS
Coef20 : 4.946
CoefTot : -0.664
ChDiff : 20
ZoneTo : 74
KR : 11
DE : 2
CleavSite : 75
HYDROPHOBIC SCALE USED
GES KD GVH1 ECS
H17 : 2.329 2.341 0.460 0.862
MesoH : 0.839 0.999 -0.010 0.488
MuHd_075 : 24.231 19.320 7.452 5.898
MuHd_095 : 23.733 20.844 7.789 7.289
MuHd_100 : 24.126 18.168 6.566 6.728
MuHd_105 : 26.341 18.011 6.191 6.628
Hmax_075 : 6.183 10.700 0.716 2.940
Hmax_095 : 11.725 15.700 2.009 2.620
Hmax_100 : -3.900 11.000 2.009 2.460
Hmax_105 : 14.300 10.033 -1.062 5.550
CLASS NOT-MITO MITO(/CHLORO)
DFM : 0.1610 0.8390
DFMC : 0.2023 0.7977
This protein is probably imported in mitochondria.
f(Ser) = 0.1757 f(Arg) = 0.0946 CMi = 0.86782
CMi is the Chloroplast/Mitochondria Index
It has been proposed by Von Heijne et al
(Eur J Biochem,1989, 180: 535-545)
##### ProP v.1.0b ProPeptide Cleavage Site Prediction #####
##### Furin-type cleavage site prediction (Arginine/Lysine residues) #####
540 NF0130780
MIRRLRLCDHQKARTLLSSLPSKSKSTTHSSIIFNQKPYIFQSMEHNPFIVGTSRLFSALRSNCITQFNHWSRSDAPIND 80
PHHHHHSSIITNSKNHGSQSPIQTFHHSHSLERTIMDHSRQRNYNTSCKLQESSGDPAQDFFDEMRRMYIHEEMVQNFYE 160
FESQRGKSAHGRRLLWTFLAFPAVFALLVACTVGFDKMFHEEVQGNIQVLVQQALSQYIQSVEQQKKASKAKESKVPTPL 240
LTKGPIINEPNDNAFNEIEKDVKRYPFLYAIIAANVAAHFVVKQLRWSAPFAQFYTRHMTCSVNNILRGRIHTLVTCTFI 320
HGGLAHLGFNMYALYSMGHLLYEVLSPEAFLGFYLGAGACASVGSILLKLITKNYYQGSVGASGAVFAIMFAGLNIISLE 400
KAKLNLIFLPDSLGGFDPKYFLPAYFIGEILFNVFSRRVKLDTGAHLTGAVFGYSALSALRKQEYHQQRRCTELSSRKTY 480
YFGQVREMRKDGLGLLISPQWAVIANFKDGSAIGQGIVFQKGQDGQWRGAGVMLDQVKAK 560
................................................................................ 80
................................................................................ 160
................................................................................ 240
................................................................................ 320
................................................................................ 400
................................................................................ 480
............................................................ 560
Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0
Name Pos Context Score Pred
____________________________v_________________
NF0130780 3 ----MIR|RL 0.081 .
NF0130780 4 ---MIRR|LR 0.075 .
NF0130780 6 -MIRRLR|LC 0.227 .
NF0130780 12 RLCDHQK|AR 0.058 .
NF0130780 14 CDHQKAR|TL 0.133 .
NF0130780 23 LSSLPSK|SK 0.104 .
NF0130780 25 SLPSKSK|ST 0.081 .
NF0130780 37 SIIFNQK|PY 0.064 .
NF0130780 55 FIVGTSR|LF 0.082 .
NF0130780 61 RLFSALR|SN 0.118 .
NF0130780 73 QFNHWSR|SD 0.167 .
NF0130780 94 SIITNSK|NH 0.064 .
NF0130780 113 HSHSLER|TI 0.108 .
NF0130780 120 TIMDHSR|QR 0.095 .
NF0130780 122 MDHSRQR|NY 0.093 .
NF0130780 129 NYNTSCK|LQ 0.066 .
NF0130780 146 DFFDEMR|RM 0.088 .
NF0130780 147 FFDEMRR|MY 0.129 .
NF0130780 165 YEFESQR|GK 0.111 .
NF0130780 167 FESQRGK|SA 0.104 .
NF0130780 172 GKSAHGR|RL 0.126 .
NF0130780 173 KSAHGRR|LL 0.176 .
NF0130780 197 CTVGFDK|MF 0.065 .
NF0130780 226 QSVEQQK|KA 0.082 .
NF0130780 227 SVEQQKK|AS 0.127 .
NF0130780 230 QQKKASK|AK 0.073 .
NF0130780 232 KKASKAK|ES 0.073 .
NF0130780 235 SKAKESK|VP 0.067 .
NF0130780 243 PTPLLTK|GP 0.057 .
NF0130780 260 AFNEIEK|DV 0.079 .
NF0130780 263 EIEKDVK|RY 0.053 .
NF0130780 264 IEKDVKR|YP 0.135 .
NF0130780 283 AAHFVVK|QL 0.074 .
NF0130780 286 FVVKQLR|WS 0.079 .
NF0130780 297 FAQFYTR|HM 0.095 .
NF0130780 308 SVNNILR|GR 0.100 .
NF0130780 310 NNILRGR|IH 0.085 .
NF0130780 369 VGSILLK|LI 0.071 .
NF0130780 373 LLKLITK|NY 0.063 .
NF0130780 401 NIISLEK|AK 0.053 .
NF0130780 403 ISLEKAK|LN 0.065 .
NF0130780 419 LGGFDPK|YF 0.070 .
NF0130780 437 LFNVFSR|RV 0.112 .
NF0130780 438 FNVFSRR|VK 0.130 .
NF0130780 440 VFSRRVK|LD 0.121 .
NF0130780 461 SALSALR|KQ 0.072 .
NF0130780 462 ALSALRK|QE 0.104 .
NF0130780 469 QEYHQQR|RC 0.080 .
NF0130780 470 EYHQQRR|CT 0.147 .
NF0130780 477 CTELSSR|KT 0.076 .
NF0130780 478 TELSSRK|TY 0.076 .
NF0130780 486 YYFGQVR|EM 0.076 .
NF0130780 489 GQVREMR|KD 0.277 .
NF0130780 490 QVREMRK|DG 0.082 .
NF0130780 508 AVIANFK|DG 0.086 .
NF0130780 521 QGIVFQK|GQ 0.079 .
NF0130780 528 GQDGQWR|GA 0.200 .
NF0130780 538 VMLDQVK|AK 0.062 .
NF0130780 540 LDQVKAK|-- 0.088 .
____________________________^_________________
Nucleotide sequence
Protein sequence
N_Linked Glycosylation
O_Linked Glycosylation
Phosphorylation