PBANKA_0107100 | proteasome subunit alpha type-2, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0107100OTHER0.9990310.0000870.000882
No Results

  • Fasta :-

    >PBANKA_0107100 MADGEYNFSLTTFSPTGKLVQIEYALNRVSSSSPALGIRAKNGVIIATEKKTPNELIEEN SIYKIQQISDHIGIVYAGMPGDFRVLLKKARKEAIKYSLQYGNEILVKELVKEIASIVQE FTQTGGVRPFGLSLLICGVDTYGYHLYQIDPSGCYFNWMATCIGKDYQNNISFLEKRYNS DIEVEDAIHTAILTLKESYEGVMNEKNIEIGVVCNNNTFKILTPNEIKDYLIEIE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0107100.fa Sequence name : PBANKA_0107100 Sequence length : 235 VALUES OF COMPUTED PARAMETERS Coef20 : 3.599 CoefTot : 0.141 ChDiff : -7 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.812 1.012 0.114 0.519 MesoH : -0.437 0.296 -0.313 0.248 MuHd_075 : 10.170 2.388 2.502 0.954 MuHd_095 : 21.755 11.137 5.237 3.846 MuHd_100 : 16.939 9.131 4.463 3.049 MuHd_105 : 5.321 4.503 2.717 1.471 Hmax_075 : 3.588 -0.350 -1.802 1.770 Hmax_095 : 11.500 3.762 0.023 2.958 Hmax_100 : 10.200 5.200 0.889 3.430 Hmax_105 : 8.867 2.100 0.027 2.438 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9277 0.0723 DFMC : 0.9345 0.0655
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 235 PBANKA_0107100 MADGEYNFSLTTFSPTGKLVQIEYALNRVSSSSPALGIRAKNGVIIATEKKTPNELIEENSIYKIQQISDHIGIVYAGMP 80 GDFRVLLKKARKEAIKYSLQYGNEILVKELVKEIASIVQEFTQTGGVRPFGLSLLICGVDTYGYHLYQIDPSGCYFNWMA 160 TCIGKDYQNNISFLEKRYNSDIEVEDAIHTAILTLKESYEGVMNEKNIEIGVVCNNNTFKILTPNEIKDYLIEIE 240 ................................................................................ 80 ................................................................................ 160 ........................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0107100 18 TFSPTGK|LV 0.080 . PBANKA_0107100 28 IEYALNR|VS 0.082 . PBANKA_0107100 39 SPALGIR|AK 0.114 . PBANKA_0107100 41 ALGIRAK|NG 0.062 . PBANKA_0107100 50 VIIATEK|KT 0.061 . PBANKA_0107100 51 IIATEKK|TP 0.080 . PBANKA_0107100 64 EENSIYK|IQ 0.061 . PBANKA_0107100 84 GMPGDFR|VL 0.070 . PBANKA_0107100 88 DFRVLLK|KA 0.066 . PBANKA_0107100 89 FRVLLKK|AR 0.108 . PBANKA_0107100 91 VLLKKAR|KE 0.080 . PBANKA_0107100 92 LLKKARK|EA 0.093 . PBANKA_0107100 96 ARKEAIK|YS 0.077 . PBANKA_0107100 108 GNEILVK|EL 0.068 . PBANKA_0107100 112 LVKELVK|EI 0.064 . PBANKA_0107100 128 TQTGGVR|PF 0.098 . PBANKA_0107100 165 MATCIGK|DY 0.067 . PBANKA_0107100 176 NISFLEK|RY 0.066 . PBANKA_0107100 177 ISFLEKR|YN 0.322 . PBANKA_0107100 196 TAILTLK|ES 0.071 . PBANKA_0107100 206 EGVMNEK|NI 0.069 . PBANKA_0107100 220 CNNNTFK|IL 0.076 . PBANKA_0107100 228 LTPNEIK|DY 0.062 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0107100 ATGGCTGATGGGGAATATAACTTTTCATTAACAACATTTAGCCCAACTGGGAAATTAGTA CAAATCGAGTATGCTTTAAATAGAGTATCCAGTAGTTCACCAGCCTTAGGAATTCGGGCA AAAAACGGAGTAATAATTGCCACGGAAAAAAAAACTCCCAACGAATTGATTGAAGAAAAC AGTATTTACAAAATTCAACAAATCAGTGATCATATTGGTATAGTATATGCTGGTATGCCT GGTGATTTTCGAGTTTTATTGAAAAAAGCAAGAAAAGAAGCTATCAAATATTCTTTACAA TATGGAAATGAAATATTAGTAAAAGAACTTGTAAAAGAAATAGCATCAATTGTTCAAGAA TTTACACAAACAGGAGGGGTTAGACCATTTGGTTTATCTTTATTAATTTGTGGTGTTGAT ACCTATGGCTATCATTTATATCAAATCGACCCATCAGGATGTTATTTTAATTGGATGGCA ACATGCATAGGAAAAGATTATCAAAATAATATTTCTTTTTTAGAAAAAAGATATAATAGT GATATAGAAGTTGAAGATGCTATACATACCGCCATATTAACTCTAAAGGAAAGTTATGAA GGTGTTATGAATGAAAAGAATATTGAAATAGGGGTTGTTTGTAATAATAATACCTTTAAA ATACTAACCCCAAATGAAATTAAAGATTATTTAATAGAAATAGAATAA
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  • Fasta :-

    MADGEYNFSLTTFSPTGKLVQIEYALNRVSSSSPALGIRAKNGVIIATEKKTPNELIEEN SIYKIQQISDHIGIVYAGMPGDFRVLLKKARKEAIKYSLQYGNEILVKELVKEIASIVQE FTQTGGVRPFGLSLLICGVDTYGYHLYQIDPSGCYFNWMATCIGKDYQNNISFLEKRYNS DIEVEDAIHTAILTLKESYEGVMNEKNIEIGVVCNNNTFKILTPNEIKDYLIEIE

  • title: active site
  • coordinates: S33,E49,K51,K64,K165
No Results
No Results
IDSitePeptideScoreMethod
PBANKA_0107100180 SKRYNSDIEV0.995unsp

PBANKA_010710      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India