PBANKA_0205400 | proteasome subunit beta type-3, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0205400OTHER0.9292810.0547960.015923
No Results

  • Fasta :-

    >PBANKA_0205400 MGSIFNYNGGCVLGMTGSQCVAIACDLRLGSNSFTTVSTNFTKIFKINDHIYVGLSGLAT DIQSLYELLRYRVNLYQIRQETDMNIDCFSNMLSNILYSNRFSPYFVNPIVVGFKVNTHI DENGNKTNVYEPYLNAYDLIGAKCETSDFVVNGVSNEQLYGMCESMYIKDQDENGLFETV SQCLLSALDRDCLSGWGAEVYVLTPDKIIKKKLKARMD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0205400.fa Sequence name : PBANKA_0205400 Sequence length : 218 VALUES OF COMPUTED PARAMETERS Coef20 : 3.397 CoefTot : -1.603 ChDiff : -6 ZoneTo : 48 KR : 3 DE : 1 CleavSite : 30 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.494 1.424 0.456 0.488 MesoH : -0.245 0.367 -0.239 0.220 MuHd_075 : 20.887 11.264 6.550 4.972 MuHd_095 : 38.816 25.789 10.317 9.867 MuHd_100 : 34.095 24.548 9.595 9.219 MuHd_105 : 31.767 24.972 9.666 8.473 Hmax_075 : 10.412 9.100 5.460 3.938 Hmax_095 : 18.550 17.238 3.182 6.563 Hmax_100 : 18.400 16.900 3.014 6.400 Hmax_105 : 18.000 15.500 2.735 5.740 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7742 0.2258 DFMC : 0.8060 0.1940
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 218 PBANKA_0205400 MGSIFNYNGGCVLGMTGSQCVAIACDLRLGSNSFTTVSTNFTKIFKINDHIYVGLSGLATDIQSLYELLRYRVNLYQIRQ 80 ETDMNIDCFSNMLSNILYSNRFSPYFVNPIVVGFKVNTHIDENGNKTNVYEPYLNAYDLIGAKCETSDFVVNGVSNEQLY 160 GMCESMYIKDQDENGLFETVSQCLLSALDRDCLSGWGAEVYVLTPDKIIKKKLKARMD 240 ................................................................................ 80 ................................................................................ 160 .......................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0205400 28 AIACDLR|LG 0.085 . PBANKA_0205400 43 VSTNFTK|IF 0.062 . PBANKA_0205400 46 NFTKIFK|IN 0.063 . PBANKA_0205400 70 SLYELLR|YR 0.071 . PBANKA_0205400 72 YELLRYR|VN 0.072 . PBANKA_0205400 79 VNLYQIR|QE 0.078 . PBANKA_0205400 101 NILYSNR|FS 0.076 . PBANKA_0205400 115 PIVVGFK|VN 0.060 . PBANKA_0205400 126 IDENGNK|TN 0.054 . PBANKA_0205400 143 YDLIGAK|CE 0.054 . PBANKA_0205400 169 CESMYIK|DQ 0.077 . PBANKA_0205400 190 LLSALDR|DC 0.119 . PBANKA_0205400 207 YVLTPDK|II 0.063 . PBANKA_0205400 210 TPDKIIK|KK 0.069 . PBANKA_0205400 211 PDKIIKK|KL 0.089 . PBANKA_0205400 212 DKIIKKK|LK 0.094 . PBANKA_0205400 214 IIKKKLK|AR 0.074 . PBANKA_0205400 216 KKKLKAR|MD 0.125 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0205400 ATGGGATCTATATTTAATTATAATGGTGGTTGCGTTCTAGGAATGACTGGATCACAATGT GTTGCAATTGCATGTGATCTTCGCCTTGGGTCAAATAGTTTTACAACAGTTAGTACGAAC TTTACAAAAATTTTTAAAATAAATGATCATATATATGTAGGATTATCAGGTTTAGCAACA GATATACAATCATTATATGAGTTGTTAAGATATCGAGTTAATTTATATCAAATACGCCAA GAAACAGATATGAATATAGATTGTTTTTCTAATATGTTATCAAACATTTTATATTCAAAT AGATTTTCACCATATTTTGTAAATCCAATTGTGGTTGGATTTAAAGTAAATACACATATA GATGAAAACGGAAATAAAACAAATGTATATGAACCTTATTTAAATGCATATGATTTAATT GGTGCCAAATGTGAAACTAGCGATTTTGTTGTTAATGGTGTATCCAACGAGCAATTATAT GGAATGTGCGAATCGATGTACATAAAGGACCAAGATGAAAATGGACTATTTGAAACGGTT TCCCAGTGCTTACTAAGTGCACTAGATCGTGATTGTTTATCTGGATGGGGTGCTGAAGTT TATGTATTAACTCCAGATAAAATAATAAAAAAAAAACTTAAAGCAAGAATGGATTAA
  • Download Fasta

  • Fasta :-

    MGSIFNYNGGCVLGMTGSQCVAIACDLRLGSNSFTTVSTNFTKIFKINDHIYVGLSGLAT DIQSLYELLRYRVNLYQIRQETDMNIDCFSNMLSNILYSNRFSPYFVNPIVVGFKVNTHI DENGNKTNVYEPYLNAYDLIGAKCETSDFVVNGVSNEQLYGMCESMYIKDQDENGLFETV SQCLLSALDRDCLSGWGAEVYVLTPDKIIKKKLKARMD

  • title: active site
  • coordinates: G10,D26,R28,K43,V154,D191,S194,G195
No Results
No Results
No Results

PBANKA_020540      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India