PBANKA_0211500 | proteasome subunit alpha type-5, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0211500OTHER0.9994040.0002190.000377
No Results

  • Fasta :-

    >PBANKA_0211500 MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAIGICVNDGVILASERRIASPLIE KDSVEKLLPIDDHIGCAMSGLMADARTLIDHARVECNHYKFIYNENINIKSCVELISELA LDFSNLSDSKRKKIMSRPFGVALLIGGVDKNGPCLWYTEPSGTNTRFLAASIGSAQEGAE LLLQENYNKNMSFEEAEILALTVLRQVMEDKLSSSNVEIASIKKSDQTFYKYKPDDITKI INSLPSPIYPTIDMTS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0211500.fa Sequence name : PBANKA_0211500 Sequence length : 256 VALUES OF COMPUTED PARAMETERS Coef20 : 3.827 CoefTot : 0.359 ChDiff : -7 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.153 1.524 0.258 0.568 MesoH : -0.757 0.475 -0.338 0.214 MuHd_075 : 26.581 14.114 5.973 6.050 MuHd_095 : 22.151 12.185 5.897 4.710 MuHd_100 : 16.896 13.422 4.329 4.470 MuHd_105 : 11.946 13.520 3.115 4.358 Hmax_075 : 3.063 1.575 -1.476 2.135 Hmax_095 : 11.800 5.700 0.856 3.450 Hmax_100 : 3.000 3.000 -1.467 2.890 Hmax_105 : -5.775 2.400 -3.727 1.000 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7940 0.2060 DFMC : 0.8277 0.1723
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 256 PBANKA_0211500 MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAIGICVNDGVILASERRIASPLIEKDSVEKLLPIDDHIGCAMSG 80 LMADARTLIDHARVECNHYKFIYNENINIKSCVELISELALDFSNLSDSKRKKIMSRPFGVALLIGGVDKNGPCLWYTEP 160 SGTNTRFLAASIGSAQEGAELLLQENYNKNMSFEEAEILALTVLRQVMEDKLSSSNVEIASIKKSDQTFYKYKPDDITKI 240 INSLPSPIYPTIDMTS 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0211500 5 --MFSTR|SE 0.129 . PBANKA_0211500 10 TRSEYDR|GV 0.202 . PBANKA_0211500 20 TFSPEGR|LF 0.104 . PBANKA_0211500 32 YALGAIK|LG 0.061 . PBANKA_0211500 52 VILASER|RI 0.068 . PBANKA_0211500 53 ILASERR|IA 0.174 . PBANKA_0211500 61 ASPLIEK|DS 0.060 . PBANKA_0211500 66 EKDSVEK|LL 0.058 . PBANKA_0211500 86 GLMADAR|TL 0.111 . PBANKA_0211500 93 TLIDHAR|VE 0.095 . PBANKA_0211500 100 VECNHYK|FI 0.077 . PBANKA_0211500 110 NENINIK|SC 0.076 . PBANKA_0211500 130 SNLSDSK|RK 0.053 . PBANKA_0211500 131 NLSDSKR|KK 0.256 . PBANKA_0211500 132 LSDSKRK|KI 0.093 . PBANKA_0211500 133 SDSKRKK|IM 0.149 . PBANKA_0211500 137 RKKIMSR|PF 0.131 . PBANKA_0211500 150 LIGGVDK|NG 0.057 . PBANKA_0211500 166 PSGTNTR|FL 0.113 . PBANKA_0211500 189 LQENYNK|NM 0.064 . PBANKA_0211500 205 LALTVLR|QV 0.101 . PBANKA_0211500 211 RQVMEDK|LS 0.065 . PBANKA_0211500 223 VEIASIK|KS 0.062 . PBANKA_0211500 224 EIASIKK|SD 0.112 . PBANKA_0211500 231 SDQTFYK|YK 0.073 . PBANKA_0211500 233 QTFYKYK|PD 0.065 . PBANKA_0211500 239 KPDDITK|II 0.062 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0211500 ATGTTTTCAACAAGAAGTGAATATGACAGAGGGGTAAACACCTTCTCTCCAGAGGGCAGA CTCTTTCAGGTAGAATATGCATTAGGAGCTATAAAGTTGGGAAGTACAGCTATAGGCATA TGCGTAAATGATGGAGTAATCTTAGCATCTGAAAGAAGAATCGCCTCTCCTTTAATAGAA AAAGATTCTGTAGAAAAATTGTTACCAATTGATGACCATATAGGATGTGCAATGAGTGGG TTAATGGCAGATGCAAGAACATTAATTGATCATGCGAGAGTAGAATGCAATCATTATAAG TTTATATATAATGAAAACATAAATATAAAATCTTGTGTAGAATTAATTTCTGAATTAGCG TTAGATTTTTCAAATTTATCTGATTCTAAAAGAAAAAAAATTATGAGCAGACCTTTTGGT GTTGCTTTATTAATAGGAGGTGTAGATAAAAATGGTCCATGCTTATGGTATACAGAACCA TCTGGAACGAATACTCGATTCTTAGCTGCATCTATAGGGTCAGCACAAGAAGGTGCAGAA TTATTACTACAAGAAAATTATAATAAAAATATGAGTTTTGAAGAAGCAGAAATTCTAGCA CTTACTGTATTAAGACAAGTAATGGAAGATAAATTATCATCATCAAATGTTGAAATAGCT TCAATTAAAAAATCAGATCAAACATTTTATAAATACAAACCAGATGATATTACTAAAATT ATTAATTCATTACCTTCTCCAATATATCCAACAATTGATATGACATCATAA
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  • Fasta :-

    MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAIGICVNDGVILASERRIASPLIE KDSVEKLLPIDDHIGCAMSGLMADARTLIDHARVECNHYKFIYNENINIKSCVELISELA LDFSNLSDSKRKKIMSRPFGVALLIGGVDKNGPCLWYTEPSGTNTRFLAASIGSAQEGAE LLLQENYNKNMSFEEAEILALTVLRQVMEDKLSSSNVEIASIKKSDQTFYKYKPDDITKI INSLPSPIYPTIDMTS

  • title: active site
  • coordinates: S35,E51,R53,K66,S174
No Results
No Results
IDSitePeptideScoreMethod
PBANKA_0211500192 SNKNMSFEEA0.997unsp

PBANKA_021150      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India