PBANKA_0216741 | lysophospholipase, putative, pseudogene

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0216741OTHER0.9999870.0000090.000004
No Results

  • Fasta :-

    >PBANKA_0216741 MEEIELNNPELRNTKYNLDGDPKTGCFCNKNGLLLKTYGWLIKNDIGIILLCMGSNIMLL TFMRINLKMPNNNEDLVVGNNNYYIYKDSWIEKFNKMVIQYMHYICKDIGNHKHGKFKRK FNSFDDLVDDVIQYMNQIQDEISNDNQTDDESHNIVTTKKKLPMYIIGHSMGGNIALRLL QLLRKAKEDIIKE*NSNNYKNCNTMLENFTNVNEVAMMNNSNDYNSDNSCASTSATTNTI ASDKDEGFYNYLYKLNIKDCATLFGMMRIKTILNDGKNSFKHFYLPIVNFMSRIATHALI PSKFRYNISKYVASIYKHDNFRNNNGIKFKCMAELIKATIQLECNINYIPNDIPLLFVHS TDDSVCSYKGAV*FYNKANVNEKKLHLVDDMNHDITMGPGNENILKKIIE*ISNLRRDDE DEINGEIEDEKENET
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0216741.fa Sequence name : PBANKA_0216741 Sequence length : 435 VALUES OF COMPUTED PARAMETERS Coef20 : 2.864 CoefTot : 0.000 ChDiff : -6 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.082 2.147 0.412 0.748 MesoH : -0.762 0.192 -0.463 0.201 MuHd_075 : 19.826 11.530 5.510 3.885 MuHd_095 : 7.027 9.914 2.696 2.089 MuHd_100 : 17.093 14.838 4.559 3.305 MuHd_105 : 22.356 15.270 4.963 3.997 Hmax_075 : -3.150 -1.167 -3.402 1.272 Hmax_095 : -11.900 0.500 -5.292 0.530 Hmax_100 : -6.300 3.100 -4.619 1.290 Hmax_105 : 3.700 6.300 -1.706 2.630 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9953 0.0047 DFMC : 0.9949 0.0051
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 435 PBANKA_0216741 MEEIELNNPELRNTKYNLDGDPKTGCFCNKNGLLLKTYGWLIKNDIGIILLCMGSNIMLLTFMRINLKMPNNNEDLVVGN 80 NNYYIYKDSWIEKFNKMVIQYMHYICKDIGNHKHGKFKRKFNSFDDLVDDVIQYMNQIQDEISNDNQTDDESHNIVTTKK 160 KLPMYIIGHSMGGNIALRLLQLLRKAKEDIIKEXNSNNYKNCNTMLENFTNVNEVAMMNNSNDYNSDNSCASTSATTNTI 240 ASDKDEGFYNYLYKLNIKDCATLFGMMRIKTILNDGKNSFKHFYLPIVNFMSRIATHALIPSKFRYNISKYVASIYKHDN 320 FRNNNGIKFKCMAELIKATIQLECNINYIPNDIPLLFVHSTDDSVCSYKGAVXFYNKANVNEKKLHLVDDMNHDITMGPG 400 NENILKKIIEXISNLRRDDEDEINGEIEDEKENET 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0216741 12 LNNPELR|NT 0.103 . PBANKA_0216741 15 PELRNTK|YN 0.111 . PBANKA_0216741 23 NLDGDPK|TG 0.056 . PBANKA_0216741 30 TGCFCNK|NG 0.059 . PBANKA_0216741 36 KNGLLLK|TY 0.066 . PBANKA_0216741 43 TYGWLIK|ND 0.063 . PBANKA_0216741 64 MLLTFMR|IN 0.079 . PBANKA_0216741 68 FMRINLK|MP 0.060 . PBANKA_0216741 87 NNYYIYK|DS 0.074 . PBANKA_0216741 93 KDSWIEK|FN 0.084 . PBANKA_0216741 96 WIEKFNK|MV 0.096 . PBANKA_0216741 107 YMHYICK|DI 0.099 . PBANKA_0216741 113 KDIGNHK|HG 0.058 . PBANKA_0216741 116 GNHKHGK|FK 0.084 . PBANKA_0216741 118 HKHGKFK|RK 0.080 . PBANKA_0216741 119 KHGKFKR|KF 0.195 . PBANKA_0216741 120 HGKFKRK|FN 0.106 . PBANKA_0216741 159 HNIVTTK|KK 0.065 . PBANKA_0216741 160 NIVTTKK|KL 0.090 . PBANKA_0216741 161 IVTTKKK|LP 0.114 . PBANKA_0216741 178 GGNIALR|LL 0.078 . PBANKA_0216741 184 RLLQLLR|KA 0.073 . PBANKA_0216741 185 LLQLLRK|AK 0.098 . PBANKA_0216741 187 QLLRKAK|ED 0.155 . PBANKA_0216741 192 AKEDIIK|EX 0.059 . PBANKA_0216741 200 XNSNNYK|NC 0.075 . PBANKA_0216741 244 NTIASDK|DE 0.068 . PBANKA_0216741 254 FYNYLYK|LN 0.065 . PBANKA_0216741 258 LYKLNIK|DC 0.068 . PBANKA_0216741 268 TLFGMMR|IK 0.085 . PBANKA_0216741 270 FGMMRIK|TI 0.062 . PBANKA_0216741 277 TILNDGK|NS 0.064 . PBANKA_0216741 281 DGKNSFK|HF 0.061 . PBANKA_0216741 293 IVNFMSR|IA 0.112 . PBANKA_0216741 303 HALIPSK|FR 0.061 . PBANKA_0216741 305 LIPSKFR|YN 0.096 . PBANKA_0216741 310 FRYNISK|YV 0.100 . PBANKA_0216741 317 YVASIYK|HD 0.058 . PBANKA_0216741 322 YKHDNFR|NN 0.091 . PBANKA_0216741 328 RNNNGIK|FK 0.082 . PBANKA_0216741 330 NNGIKFK|CM 0.071 . PBANKA_0216741 337 CMAELIK|AT 0.072 . PBANKA_0216741 369 DSVCSYK|GA 0.070 . PBANKA_0216741 377 AVXFYNK|AN 0.058 . PBANKA_0216741 383 KANVNEK|KL 0.072 . PBANKA_0216741 384 ANVNEKK|LH 0.084 . PBANKA_0216741 406 GNENILK|KI 0.069 . PBANKA_0216741 407 NENILKK|II 0.144 . PBANKA_0216741 416 EXISNLR|RD 0.072 . PBANKA_0216741 417 XISNLRR|DD 0.307 . PBANKA_0216741 431 GEIEDEK|EN 0.068 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0216741 ATGGAAGAAATTGAATTGAATAATCCTGAATTAAGAAATACAAAATATAATTTAGATGGT GATCCTAAGACAGGTTGTTTCTGTAATAAAAATGGTTTACTTTTAAAAACATATGGGTGG CTGATTAAAAATGATATAGGAATTATATTGTTATGCATGGGTTCAAATATCATGCTCTTA ACTTTTATGAGAATAAATTTAAAAATGCCAAATAACAATGAGGACTTAGTAGTAGGCAAT AATAATTACTATATTTATAAAGATAGTTGGATTGAAAAATTTAATAAAATGGTTATTCAG TATATGCACTATATTTGCAAGGACATTGGGAATCACAAGCATGGAAAATTTAAGAGGAAG TTTAATAGTTTTGATGATTTAGTTGATGATGTAATACAATATATGAACCAAATTCAAGAT GAAATCTCAAATGATAATCAAACAGATGATGAATCTCATAATATAGTAACAACTAAAAAA AAACTTCCTATGTATATTATTGGGCATTCGATGGGAGGAAATATTGCTTTAAGACTATTA CAATTATTAAGGAAAGCAAAAGAAGACATAATTAAGGAATGAAATTCAAATAACTATAAA AATTGTAACACCATGCTAGAAAATTTTACTAATGTTAATGAAGTTGCAATGATGAATAAT TCTAATGATTATAATTCCGATAATTCATGTGCTAGTACCTCTGCTACGACAAATACTATT GCTAGTGATAAAGATGAAGGATTCTATAATTATTTATATAAATTAAATATTAAAGATTGC GCAACATTATTTGGAATGATGAGAATAAAAACAATATTGAATGATGGAAAAAATTCATTT AAACATTTTTATTTACCTATAGTAAACTTCATGTCTCGTATAGCGACCCATGCACTAATT CCGTCAAAATTTCGTTATAATATATCCAAGTATGTTGCTAGTATATATAAACACGATAAT TTTCGAAATAATAATGGAATCAAATTTAAATGTATGGCTGAACTTATAAAGGCAACGATC CAATTGGAGTGTAATATTAATTACATTCCAAATGATATTCCTTTATTATTTGTGCATTCA ACAGATGATAGTGTTTGTTCTTATAAAGGGGCAGTTTAGTTTTATAATAAAGCAAATGTT AATGAAAAAAAATTACACCTTGTTGATGATATGAATCATGATATAACGATGGGGCCAGGA AATGAAAACATTTTAAAAAAAATTATTGAATGAATTTCTAATTTAAGAAGGGATGATGAA GATGAAATAAATGGTGAAATAGAAGATGAAAAAGAAAATGAAACATAA
  • Download Fasta

  • Fasta :-

    MEEIELNNPELRNTKYNLDGDPKTGCFCNKNGLLLKTYGWLIKNDIGIILLCMGSNIMLL TFMRINLKMPNNNEDLVVGNNNYYIYKDSWIEKFNKMVIQYMHYICKDIGNHKHGKFKRK FNSFDDLVDDVIQYMNQIQDEISNDNQTDDESHNIVTTKKKLPMYIIGHSMGGNIALRLL QLLRKAKEDIIKE*NSNNYKNCNTMLENFTNVNEVAMMNNSNDYNSDNSCASTSATTNTI ASDKDEGFYNYLYKLNIKDCATLFGMMRIKTILNDGKNSFKHFYLPIVNFMSRIATHALI PSKFRYNISKYVASIYKHDNFRNNNGIKFKCMAELIKATIQLECNINYIPNDIPLLFVHS TDDSVCSYKGAV*FYNKANVNEKKLHLVDDMNHDITMGPGNENILKKIIE*ISNLRRDDE DEINGEIEDEKENET

    No Results
No Results
No Results
IDSitePeptideScoreMethod
PBANKA_0216741242 SNTIASDKDE0.997unsp

PBANKA_0216741      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India