PBANKA_0405700 | ATP-dependent Clp protease proteolytic subunit, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:  GO:0020011      

  • Curated_GO_Components:  apicoplast      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0405700SP0.0394610.9602160.000323CS pos: 20-21. IEA-KQ. Pr: 0.8470
No Results

  • Fasta :-

    >PBANKA_0405700 MIYLILFIFLILIKNNAIEAKQNLKKPNILTFINFSNTNLLEKQKKRIKEKFNTQNNKWN LLTNDEILNKNIGVNEINDVKNFSGNLDKTKVNINNVTKIYQEEKSKVRQNVMEKMVEKI LKKKKYKKLEKLLCCNNSIKDMKKNIKLYFFKKRIIYLTDEINKKTSDELIKQLLYLDNI NHNDIKIYINSPGGSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSF PNCRIMIHQPLGNAYGHPHDIEIQTKEILYLKKLLYYYLSKFTNKNEETIEKHSDRDYYM NAYEAKEYGIVDEVVETKLTHPYFIGLIKN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0405700.fa Sequence name : PBANKA_0405700 Sequence length : 330 VALUES OF COMPUTED PARAMETERS Coef20 : 4.456 CoefTot : -0.818 ChDiff : 20 ZoneTo : 41 KR : 4 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.971 2.200 0.343 0.766 MesoH : -0.571 0.340 -0.385 0.247 MuHd_075 : 20.806 17.131 6.346 5.600 MuHd_095 : 26.739 17.183 7.851 5.394 MuHd_100 : 27.539 19.001 8.282 5.709 MuHd_105 : 22.744 17.010 7.277 4.932 Hmax_075 : 17.325 8.867 4.213 3.500 Hmax_095 : 10.800 15.000 1.190 5.260 Hmax_100 : 10.800 15.000 1.190 5.260 Hmax_105 : 1.837 10.600 0.890 2.975 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8844 0.1156 DFMC : 0.8988 0.1012
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 330 PBANKA_0405700 MIYLILFIFLILIKNNAIEAKQNLKKPNILTFINFSNTNLLEKQKKRIKEKFNTQNNKWNLLTNDEILNKNIGVNEINDV 80 KNFSGNLDKTKVNINNVTKIYQEEKSKVRQNVMEKMVEKILKKKKYKKLEKLLCCNNSIKDMKKNIKLYFFKKRIIYLTD 160 EINKKTSDELIKQLLYLDNINHNDIKIYINSPGGSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSF 240 PNCRIMIHQPLGNAYGHPHDIEIQTKEILYLKKLLYYYLSKFTNKNEETIEKHSDRDYYMNAYEAKEYGIVDEVVETKLT 320 HPYFIGLIKN 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0405700 14 IFLILIK|NN 0.056 . PBANKA_0405700 21 NNAIEAK|QN 0.076 . PBANKA_0405700 25 EAKQNLK|KP 0.054 . PBANKA_0405700 26 AKQNLKK|PN 0.095 . PBANKA_0405700 43 NTNLLEK|QK 0.062 . PBANKA_0405700 45 NLLEKQK|KR 0.060 . PBANKA_0405700 46 LLEKQKK|RI 0.142 . PBANKA_0405700 47 LEKQKKR|IK 0.249 . PBANKA_0405700 49 KQKKRIK|EK 0.063 . PBANKA_0405700 51 KKRIKEK|FN 0.094 . PBANKA_0405700 58 FNTQNNK|WN 0.059 . PBANKA_0405700 70 NDEILNK|NI 0.069 . PBANKA_0405700 81 NEINDVK|NF 0.061 . PBANKA_0405700 89 FSGNLDK|TK 0.060 . PBANKA_0405700 91 GNLDKTK|VN 0.064 . PBANKA_0405700 99 NINNVTK|IY 0.067 . PBANKA_0405700 105 KIYQEEK|SK 0.079 . PBANKA_0405700 107 YQEEKSK|VR 0.060 . PBANKA_0405700 109 EEKSKVR|QN 0.081 . PBANKA_0405700 115 RQNVMEK|MV 0.112 . PBANKA_0405700 119 MEKMVEK|IL 0.065 . PBANKA_0405700 122 MVEKILK|KK 0.058 . PBANKA_0405700 123 VEKILKK|KK 0.089 . PBANKA_0405700 124 EKILKKK|KY 0.105 . PBANKA_0405700 125 KILKKKK|YK 0.089 . PBANKA_0405700 127 LKKKKYK|KL 0.088 . PBANKA_0405700 128 KKKKYKK|LE 0.073 . PBANKA_0405700 131 KYKKLEK|LL 0.058 . PBANKA_0405700 140 CCNNSIK|DM 0.073 . PBANKA_0405700 143 NSIKDMK|KN 0.064 . PBANKA_0405700 144 SIKDMKK|NI 0.099 . PBANKA_0405700 147 DMKKNIK|LY 0.060 . PBANKA_0405700 152 IKLYFFK|KR 0.066 . PBANKA_0405700 153 KLYFFKK|RI 0.102 . PBANKA_0405700 154 LYFFKKR|II 0.163 . PBANKA_0405700 164 LTDEINK|KT 0.064 . PBANKA_0405700 165 TDEINKK|TS 0.104 . PBANKA_0405700 172 TSDELIK|QL 0.059 . PBANKA_0405700 186 INHNDIK|IY 0.070 . PBANKA_0405700 210 DIFNYIK|SD 0.072 . PBANKA_0405700 233 VILASGK|KG 0.056 . PBANKA_0405700 234 ILASGKK|GK 0.116 . PBANKA_0405700 236 ASGKKGK|RK 0.066 . PBANKA_0405700 237 SGKKGKR|KS 0.148 . PBANKA_0405700 238 GKKGKRK|SF 0.159 . PBANKA_0405700 244 KSFPNCR|IM 0.087 . PBANKA_0405700 266 DIEIQTK|EI 0.059 . PBANKA_0405700 272 KEILYLK|KL 0.053 . PBANKA_0405700 273 EILYLKK|LL 0.089 . PBANKA_0405700 281 LYYYLSK|FT 0.077 . PBANKA_0405700 285 LSKFTNK|NE 0.081 . PBANKA_0405700 292 NEETIEK|HS 0.061 . PBANKA_0405700 296 IEKHSDR|DY 0.119 . PBANKA_0405700 306 MNAYEAK|EY 0.096 . PBANKA_0405700 318 DEVVETK|LT 0.068 . PBANKA_0405700 329 YFIGLIK|N- 0.061 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0405700 ATGATATATTTAATATTGTTTATATTTTTGATCTTAATAAAAAATAATGCGATTGAAGCA AAACAGAATTTAAAGAAACCAAACATTTTAACGTTTATAAATTTTTCAAATACAAATTTA TTAGAAAAACAAAAAAAACGAATAAAAGAAAAGTTTAATACTCAAAATAATAAATGGAAT TTATTAACAAATGATGAAATATTAAATAAAAATATAGGTGTAAATGAAATAAATGATGTA AAAAATTTTTCAGGAAATTTAGATAAAACCAAAGTTAATATAAACAATGTTACAAAAATA TATCAAGAGGAAAAAAGTAAGGTCAGACAAAATGTGATGGAAAAAATGGTGGAAAAAATA TTAAAAAAAAAAAAATATAAAAAATTGGAAAAGTTATTATGTTGTAATAATAGTATTAAA GATATGAAAAAAAATATAAAATTATATTTTTTTAAAAAAAGAATAATATATTTAACAGAT GAAATAAATAAAAAAACATCAGATGAGCTTATTAAACAATTGTTATATTTAGATAATATA AATCATAATGATATAAAAATATATATCAATTCCCCTGGCGGTTCAATAAATGAGGGATTA GCAATTTTAGATATTTTTAATTATATAAAATCAGATATACAAACAATATCATTTGGTTTA GTAGCCTCAATGGCTTCTGTAATTTTAGCGAGTGGGAAAAAAGGAAAAAGAAAATCATTT CCAAATTGTCGAATTATGATACATCAACCACTTGGGAATGCATATGGCCATCCTCATGAT ATTGAAATACAAACAAAAGAAATCCTTTATCTTAAAAAACTTTTATATTATTATTTATCA AAATTTACAAATAAAAATGAAGAAACAATTGAAAAACATTCAGACAGGGATTATTATATG AATGCATACGAAGCAAAAGAATATGGAATTGTTGATGAAGTTGTTGAAACTAAATTAACA CATCCTTATTTTATTGGCCTAATCAAGAATTGA
  • Download Fasta

  • Fasta :-

    MIYLILFIFLILIKNNAIEAKQNLKKPNILTFINFSNTNLLEKQKKRIKEKFNTQNNKWN LLTNDEILNKNIGVNEINDVKNFSGNLDKTKVNINNVTKIYQEEKSKVRQNVMEKMVEKI LKKKKYKKLEKLLCCNNSIKDMKKNIKLYFFKKRIIYLTDEINKKTSDELIKQLLYLDNI NHNDIKIYINSPGGSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSF PNCRIMIHQPLGNAYGHPHDIEIQTKEILYLKKLLYYYLSKFTNKNEETIEKHSDRDYYM NAYEAKEYGIVDEVVETKLTHPYFIGLIKN

  • title: active site residues
  • coordinates: S223,H248,D297
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_0405700167 SNKKTSDELI0.994unspPBANKA_0405700294 SIEKHSDRDY0.998unsp

PBANKA_040570      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India