PBANKA_0516300 | DER1-like protein, putative

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_IDPredictionOTHERSPmTPCS_Position
PBANKA_0516300OTHER0.9999710.0000070.000022
No Results

  • Fasta :-

    >PBANKA_0516300 MDLSGPEVWYNNLPNVTKYMIIIIFLVTLLITCNLLNVVHILLDWNLIYNKYQIWRIFFN FFYVGNFSLSWVFFMSLFAQFSSSLEKNEMFSTPGSYLYFITIHCIFLSLISIMFYWPRG YPFLGNSLLFAIIYYWSRREAWSHVSIYFFTVKGYQLPFALIFLHLIMGQSLWGDIMGLL SGHFYYFLREILPREGGPNLVEKTPKIFEKIMIKLGNFTINNGIRNNYNRYGYWRTNNQT PTTNMGSRRVFIGRGMRLGGS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0516300.fa Sequence name : PBANKA_0516300 Sequence length : 261 VALUES OF COMPUTED PARAMETERS Coef20 : 3.171 CoefTot : 0.000 ChDiff : 10 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.282 2.824 0.524 0.874 MesoH : 0.954 1.127 -0.063 0.513 MuHd_075 : 17.691 9.459 4.004 2.158 MuHd_095 : 27.614 15.980 7.043 5.159 MuHd_100 : 18.297 11.692 5.379 4.632 MuHd_105 : 16.818 12.016 6.043 4.552 Hmax_075 : 3.100 5.500 -2.106 2.550 Hmax_095 : 9.362 7.525 -0.512 3.850 Hmax_100 : 1.900 2.100 -2.208 2.660 Hmax_105 : 10.400 9.567 1.222 4.440 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9619 0.0381 DFMC : 0.9830 0.0170
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 261 PBANKA_0516300 MDLSGPEVWYNNLPNVTKYMIIIIFLVTLLITCNLLNVVHILLDWNLIYNKYQIWRIFFNFFYVGNFSLSWVFFMSLFAQ 80 FSSSLEKNEMFSTPGSYLYFITIHCIFLSLISIMFYWPRGYPFLGNSLLFAIIYYWSRREAWSHVSIYFFTVKGYQLPFA 160 LIFLHLIMGQSLWGDIMGLLSGHFYYFLREILPREGGPNLVEKTPKIFEKIMIKLGNFTINNGIRNNYNRYGYWRTNNQT 240 PTTNMGSRRVFIGRGMRLGGS 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ..................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0516300 18 NLPNVTK|YM 0.070 . PBANKA_0516300 51 WNLIYNK|YQ 0.057 . PBANKA_0516300 56 NKYQIWR|IF 0.087 . PBANKA_0516300 87 FSSSLEK|NE 0.065 . PBANKA_0516300 119 IMFYWPR|GY 0.094 . PBANKA_0516300 138 IIYYWSR|RE 0.072 . PBANKA_0516300 139 IYYWSRR|EA 0.162 . PBANKA_0516300 153 IYFFTVK|GY 0.058 . PBANKA_0516300 189 HFYYFLR|EI 0.098 . PBANKA_0516300 194 LREILPR|EG 0.119 . PBANKA_0516300 203 GPNLVEK|TP 0.076 . PBANKA_0516300 206 LVEKTPK|IF 0.075 . PBANKA_0516300 210 TPKIFEK|IM 0.082 . PBANKA_0516300 214 FEKIMIK|LG 0.054 . PBANKA_0516300 225 TINNGIR|NN 0.088 . PBANKA_0516300 230 IRNNYNR|YG 0.116 . PBANKA_0516300 235 NRYGYWR|TN 0.113 . PBANKA_0516300 248 TTNMGSR|RV 0.176 . PBANKA_0516300 249 TNMGSRR|VF 0.177 . PBANKA_0516300 254 RRVFIGR|GM 0.119 . PBANKA_0516300 257 FIGRGMR|LG 0.174 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0516300 ATGGATTTATCGGGCCCAGAAGTTTGGTACAACAATTTGCCAAATGTGACAAAATATATG ATAATAATAATTTTTTTAGTTACTTTATTAATAACATGCAATTTATTAAATGTAGTACAT ATATTATTAGATTGGAATTTAATATATAATAAATATCAAATATGGAGAATTTTTTTTAAC TTTTTTTATGTGGGAAATTTCTCACTTTCTTGGGTATTTTTTATGTCGTTGTTTGCTCAA TTTTCATCATCTTTGGAAAAAAATGAAATGTTTTCGACACCTGGGTCATATTTGTATTTT ATAACTATCCATTGTATTTTTCTATCACTAATAAGTATTATGTTCTATTGGCCAAGAGGT TATCCATTTTTAGGAAACTCCCTCTTATTTGCAATAATTTATTACTGGTCTCGAAGAGAA GCATGGAGTCACGTTTCGATTTATTTCTTTACAGTTAAAGGATACCAATTACCATTCGCC TTAATATTTTTACACTTAATAATGGGGCAGTCATTATGGGGAGATATTATGGGACTTTTA TCGGGGCATTTTTATTATTTTTTAAGAGAGATTCTTCCAAGAGAAGGCGGACCTAATCTC GTGGAAAAGACGCCCAAGATATTCGAAAAAATAATGATAAAGTTAGGAAATTTCACGATA AATAATGGAATAAGAAATAATTACAACAGATATGGATATTGGCGTACAAATAATCAAACA CCAACAACCAACATGGGGTCAAGAAGAGTTTTTATTGGGAGAGGTATGAGATTAGGCGGT AGTTGA
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  • Fasta :-

    MDLSGPEVWYNNLPNVTKYMIIIIFLVTLLITCNLLNVVHILLDWNLIYNKYQIWRIFFN FFYVGNFSLSWVFFMSLFAQFSSSLEKNEMFSTPGSYLYFITIHCIFLSLISIMFYWPRG YPFLGNSLLFAIIYYWSRREAWSHVSIYFFTVKGYQLPFALIFLHLIMGQSLWGDIMGLL SGHFYYFLREILPREGGPNLVEKTPKIFEKIMIKLGNFTINNGIRNNYNRYGYWRTNNQT PTTNMGSRRVFIGRGMRLGGS

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PBANKA_051630      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India