PBANKA_0612100 | conserved protein, unknown function

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  • Computed_GO_Function_IDs:        

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  • Curated_GO_Component_IDs:        

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No Results
No Results

  • Fasta :-

    >PBANKA_0612100 MLAKKIFLQNFYYLRVVKNVPRKIMDRHILNHRIFYSSDLSRKKVAIDKRGNKKNDNDNN NSRSIDKPNLIEKEEIKNKKNTEFINMHENQEKEHFPNMVLKILSDKHGEEEKKRLINEY KKCISKYFEIKDEINNLSHKKNELEFGDIFATLYLCYIEKIYDLDFLTNLSNIFDILYKF EKNVNDKHQSNKQDHVINKDNIKYFLMIFYYFSFLNIKNDILYMNIKNYIINNEVDPIII YKYLESFSFIKTLYDHNKTYEHISPIVEIIMEEFDKFNNYFLLNILHFLHTLNFIDKNVF SFLSKKLNKNIYRQNANYYDLCMLSRTYALYKNYNITFNKYLCNDIIANITKYEDKFQNE NTAIGENIISSKQNINDSSEQTNNSKDIFKKNMNNGNNNETNSYIDEIKNIDRTNYFMFK NSLYNDGINFYSFFVNSKTENREKYKKETNMNISFTIPIKNDNNFEKSKTDENNTWHDIF DNDVKHKNKDINNKPFINIKNEDINDDKIVKMCNEYLKENILYEFNHIQLVNIFKNISEI FNKDIIKIDNINISEDIDIYTNNYNDENKIIHYKKKLLFIENYYIGHIFFIVDSLLSLNV HHANKKDFTNLENKVFNLIKNNENYIITNFDSNEIKSVLIFLSQTNKIYKESFIYCLTHR IADLYINNLCTAKILAIYLHNLLHFTKHKISKKNRFNHTIRNVIYNTYPWLNSNKNSHNI QTTNSINSEITNIYNNIKVKNYSLLQLLSIYICKNVYFMSLSTLTSILRSFSYFSFNDVN FYNVFIPLFMKHMDNLANVDILNITQAYNKRKIQNKYFYYLLSKVYQSKSTEKINNLDPP IKLIG
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0612100.fa Sequence name : PBANKA_0612100 Sequence length : 845 VALUES OF COMPUTED PARAMETERS Coef20 : 4.267 CoefTot : -0.665 ChDiff : 17 ZoneTo : 25 KR : 6 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.082 1.494 0.059 0.628 MesoH : -0.127 0.536 -0.319 0.278 MuHd_075 : 45.345 31.257 13.886 10.805 MuHd_095 : 33.675 18.133 8.758 8.210 MuHd_100 : 30.206 17.624 8.278 7.224 MuHd_105 : 43.889 24.246 11.408 9.961 Hmax_075 : 17.733 19.600 3.247 7.303 Hmax_095 : 8.137 12.950 1.025 4.786 Hmax_100 : 6.500 13.700 0.929 4.300 Hmax_105 : 9.300 14.700 1.089 5.380 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0065 0.9935 DFMC : 0.0301 0.9699 This protein is probably imported in mitochondria. f(Ser) = 0.0000 f(Arg) = 0.0800 CMi = 0.00000 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 845 PBANKA_0612100 MLAKKIFLQNFYYLRVVKNVPRKIMDRHILNHRIFYSSDLSRKKVAIDKRGNKKNDNDNNNSRSIDKPNLIEKEEIKNKK 80 NTEFINMHENQEKEHFPNMVLKILSDKHGEEEKKRLINEYKKCISKYFEIKDEINNLSHKKNELEFGDIFATLYLCYIEK 160 IYDLDFLTNLSNIFDILYKFEKNVNDKHQSNKQDHVINKDNIKYFLMIFYYFSFLNIKNDILYMNIKNYIINNEVDPIII 240 YKYLESFSFIKTLYDHNKTYEHISPIVEIIMEEFDKFNNYFLLNILHFLHTLNFIDKNVFSFLSKKLNKNIYRQNANYYD 320 LCMLSRTYALYKNYNITFNKYLCNDIIANITKYEDKFQNENTAIGENIISSKQNINDSSEQTNNSKDIFKKNMNNGNNNE 400 TNSYIDEIKNIDRTNYFMFKNSLYNDGINFYSFFVNSKTENREKYKKETNMNISFTIPIKNDNNFEKSKTDENNTWHDIF 480 DNDVKHKNKDINNKPFINIKNEDINDDKIVKMCNEYLKENILYEFNHIQLVNIFKNISEIFNKDIIKIDNINISEDIDIY 560 TNNYNDENKIIHYKKKLLFIENYYIGHIFFIVDSLLSLNVHHANKKDFTNLENKVFNLIKNNENYIITNFDSNEIKSVLI 640 FLSQTNKIYKESFIYCLTHRIADLYINNLCTAKILAIYLHNLLHFTKHKISKKNRFNHTIRNVIYNTYPWLNSNKNSHNI 720 QTTNSINSEITNIYNNIKVKNYSLLQLLSIYICKNVYFMSLSTLTSILRSFSYFSFNDVNFYNVFIPLFMKHMDNLANVD 800 ILNITQAYNKRKIQNKYFYYLLSKVYQSKSTEKINNLDPPIKLIG 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ............................................. 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0612100 4 ---MLAK|KI 0.065 . PBANKA_0612100 5 --MLAKK|IF 0.091 . PBANKA_0612100 15 QNFYYLR|VV 0.093 . PBANKA_0612100 18 YYLRVVK|NV 0.136 . PBANKA_0612100 22 VVKNVPR|KI 0.087 . PBANKA_0612100 23 VKNVPRK|IM 0.101 . PBANKA_0612100 27 PRKIMDR|HI 0.092 . PBANKA_0612100 33 RHILNHR|IF 0.075 . PBANKA_0612100 42 YSSDLSR|KK 0.095 . PBANKA_0612100 43 SSDLSRK|KV 0.097 . PBANKA_0612100 44 SDLSRKK|VA 0.112 . PBANKA_0612100 49 KKVAIDK|RG 0.059 . PBANKA_0612100 50 KVAIDKR|GN 0.208 . PBANKA_0612100 53 IDKRGNK|KN 0.101 . PBANKA_0612100 54 DKRGNKK|ND 0.101 . PBANKA_0612100 63 NDNNNSR|SI 0.162 . PBANKA_0612100 67 NSRSIDK|PN 0.062 . PBANKA_0612100 73 KPNLIEK|EE 0.065 . PBANKA_0612100 77 IEKEEIK|NK 0.059 . PBANKA_0612100 79 KEEIKNK|KN 0.069 . PBANKA_0612100 80 EEIKNKK|NT 0.133 . PBANKA_0612100 93 MHENQEK|EH 0.066 . PBANKA_0612100 102 FPNMVLK|IL 0.100 . PBANKA_0612100 107 LKILSDK|HG 0.067 . PBANKA_0612100 113 KHGEEEK|KR 0.056 . PBANKA_0612100 114 HGEEEKK|RL 0.084 . PBANKA_0612100 115 GEEEKKR|LI 0.210 . PBANKA_0612100 121 RLINEYK|KC 0.067 . PBANKA_0612100 122 LINEYKK|CI 0.149 . PBANKA_0612100 126 YKKCISK|YF 0.067 . PBANKA_0612100 131 SKYFEIK|DE 0.079 . PBANKA_0612100 140 INNLSHK|KN 0.072 . PBANKA_0612100 141 NNLSHKK|NE 0.088 . PBANKA_0612100 160 YLCYIEK|IY 0.060 . PBANKA_0612100 179 IFDILYK|FE 0.060 . PBANKA_0612100 182 ILYKFEK|NV 0.090 . PBANKA_0612100 187 EKNVNDK|HQ 0.085 . PBANKA_0612100 192 DKHQSNK|QD 0.076 . PBANKA_0612100 199 QDHVINK|DN 0.097 . PBANKA_0612100 203 INKDNIK|YF 0.067 . PBANKA_0612100 218 FSFLNIK|ND 0.055 . PBANKA_0612100 227 ILYMNIK|NY 0.062 . PBANKA_0612100 242 DPIIIYK|YL 0.068 . PBANKA_0612100 251 ESFSFIK|TL 0.068 . PBANKA_0612100 258 TLYDHNK|TY 0.086 . PBANKA_0612100 276 IMEEFDK|FN 0.067 . PBANKA_0612100 297 TLNFIDK|NV 0.083 . PBANKA_0612100 305 VFSFLSK|KL 0.066 . PBANKA_0612100 306 FSFLSKK|LN 0.089 . PBANKA_0612100 309 LSKKLNK|NI 0.069 . PBANKA_0612100 313 LNKNIYR|QN 0.088 . PBANKA_0612100 326 DLCMLSR|TY 0.071 . PBANKA_0612100 332 RTYALYK|NY 0.063 . PBANKA_0612100 340 YNITFNK|YL 0.066 . PBANKA_0612100 352 IIANITK|YE 0.072 . PBANKA_0612100 356 ITKYEDK|FQ 0.064 . PBANKA_0612100 372 ENIISSK|QN 0.062 . PBANKA_0612100 386 EQTNNSK|DI 0.074 . PBANKA_0612100 390 NSKDIFK|KN 0.065 . PBANKA_0612100 391 SKDIFKK|NM 0.115 . PBANKA_0612100 409 SYIDEIK|NI 0.064 . PBANKA_0612100 413 EIKNIDR|TN 0.077 . PBANKA_0612100 420 TNYFMFK|NS 0.059 . PBANKA_0612100 438 SFFVNSK|TE 0.056 . PBANKA_0612100 442 NSKTENR|EK 0.105 . PBANKA_0612100 444 KTENREK|YK 0.064 . PBANKA_0612100 446 ENREKYK|KE 0.067 . PBANKA_0612100 447 NREKYKK|ET 0.110 . PBANKA_0612100 460 SFTIPIK|ND 0.065 . PBANKA_0612100 467 NDNNFEK|SK 0.123 . PBANKA_0612100 469 NNFEKSK|TD 0.066 . PBANKA_0612100 485 IFDNDVK|HK 0.060 . PBANKA_0612100 487 DNDVKHK|NK 0.069 . PBANKA_0612100 489 DVKHKNK|DI 0.081 . PBANKA_0612100 494 NKDINNK|PF 0.064 . PBANKA_0612100 500 KPFINIK|NE 0.062 . PBANKA_0612100 508 EDINDDK|IV 0.066 . PBANKA_0612100 511 NDDKIVK|MC 0.060 . PBANKA_0612100 518 MCNEYLK|EN 0.066 . PBANKA_0612100 535 QLVNIFK|NI 0.075 . PBANKA_0612100 543 ISEIFNK|DI 0.086 . PBANKA_0612100 547 FNKDIIK|ID 0.060 . PBANKA_0612100 569 NYNDENK|II 0.069 . PBANKA_0612100 574 NKIIHYK|KK 0.059 . PBANKA_0612100 575 KIIHYKK|KL 0.117 . PBANKA_0612100 576 IIHYKKK|LL 0.137 . PBANKA_0612100 605 NVHHANK|KD 0.066 . PBANKA_0612100 606 VHHANKK|DF 0.126 . PBANKA_0612100 614 FTNLENK|VF 0.058 . PBANKA_0612100 620 KVFNLIK|NN 0.071 . PBANKA_0612100 636 FDSNEIK|SV 0.124 . PBANKA_0612100 647 FLSQTNK|IY 0.062 . PBANKA_0612100 650 QTNKIYK|ES 0.067 . PBANKA_0612100 660 IYCLTHR|IA 0.094 . PBANKA_0612100 673 NNLCTAK|IL 0.066 . PBANKA_0612100 687 NLLHFTK|HK 0.064 . PBANKA_0612100 689 LHFTKHK|IS 0.067 . PBANKA_0612100 692 TKHKISK|KN 0.071 . PBANKA_0612100 693 KHKISKK|NR 0.084 . PBANKA_0612100 695 KISKKNR|FN 0.241 . PBANKA_0612100 701 RFNHTIR|NV 0.122 . PBANKA_0612100 715 PWLNSNK|NS 0.067 . PBANKA_0612100 738 NIYNNIK|VK 0.063 . PBANKA_0612100 740 YNNIKVK|NY 0.071 . PBANKA_0612100 754 LSIYICK|NV 0.068 . PBANKA_0612100 769 TLTSILR|SF 0.091 . PBANKA_0612100 791 FIPLFMK|HM 0.058 . PBANKA_0612100 810 ITQAYNK|RK 0.056 . PBANKA_0612100 811 TQAYNKR|KI 0.190 . PBANKA_0612100 812 QAYNKRK|IQ 0.102 . PBANKA_0612100 816 KRKIQNK|YF 0.080 . PBANKA_0612100 824 FYYLLSK|VY 0.053 . PBANKA_0612100 829 SKVYQSK|ST 0.111 . PBANKA_0612100 833 QSKSTEK|IN 0.061 . PBANKA_0612100 842 NLDPPIK|LI 0.073 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0612100 ATGCTGGCAAAAAAAATATTTCTTCAAAATTTTTATTATCTTCGTGTAGTAAAAAATGTG CCACGCAAAATTATGGACAGACATATTCTAAATCATCGAATTTTCTATTCTAGCGATCTA TCTCGAAAAAAGGTAGCTATTGACAAAAGAGGAAACAAAAAAAATGACAACGATAATAAT AATTCGAGGTCTATTGATAAACCAAATTTAATTGAAAAAGAAGAAATAAAAAATAAAAAA AATACCGAATTTATTAATATGCATGAAAATCAAGAAAAAGAACATTTCCCCAATATGGTC TTAAAAATTTTAAGTGATAAACATGGTGAAGAAGAAAAAAAGCGTTTAATAAATGAATAT AAAAAATGTATAAGCAAATATTTTGAAATAAAAGACGAAATAAATAATTTAAGTCATAAA AAAAATGAACTAGAATTTGGTGATATTTTTGCAACTCTTTACTTATGTTATATAGAGAAA ATATATGATTTAGATTTTTTAACAAATTTAAGTAATATTTTTGATATATTGTATAAATTT GAAAAAAATGTAAATGATAAACATCAGTCAAACAAACAAGATCATGTAATAAACAAAGAT AATATAAAATACTTCTTGATGATTTTTTATTACTTTTCTTTTTTAAATATTAAAAATGAT ATATTATATATGAATATAAAAAATTATATTATTAATAATGAAGTCGATCCAATAATAATT TATAAATATTTAGAAAGTTTTTCTTTTATAAAAACTTTATATGATCATAATAAAACATAT GAACATATTAGTCCAATAGTTGAAATAATAATGGAAGAATTTGATAAATTTAACAATTAT TTTTTATTAAATATTCTACATTTTTTGCACACATTAAATTTTATAGATAAAAATGTATTT TCTTTTTTATCAAAAAAGTTAAATAAAAATATTTATCGACAAAACGCAAATTATTATGAC TTGTGCATGTTATCTCGAACATATGCTCTATATAAAAATTATAACATCACATTTAATAAA TATTTATGTAATGATATAATAGCTAATATAACTAAATATGAAGATAAATTTCAAAATGAA AATACAGCAATAGGAGAAAATATAATATCGTCTAAACAAAACATAAATGATAGTTCAGAA CAAACAAATAACTCAAAAGATATATTTAAAAAAAATATGAATAATGGCAATAATAATGAA ACGAATTCATATATAGATGAAATAAAAAATATAGATAGAACAAACTATTTTATGTTTAAA AACAGCTTATACAACGATGGAATAAATTTTTATTCATTTTTTGTAAATTCGAAAACCGAA AATAGAGAAAAATATAAAAAAGAAACAAATATGAATATCAGTTTTACAATTCCCATCAAA AATGATAATAACTTTGAAAAGTCGAAAACTGATGAAAATAATACATGGCATGATATATTT GATAATGATGTTAAACATAAAAATAAAGACATAAATAACAAACCATTTATTAATATTAAA AACGAAGATATTAATGATGATAAAATAGTTAAAATGTGTAATGAATATTTAAAGGAAAAT ATATTGTATGAATTTAACCATATTCAACTTGTAAACATTTTTAAAAATATAAGCGAAATA TTTAATAAAGATATAATAAAAATAGATAATATTAATATTAGTGAAGATATAGACATATAT ACTAATAATTATAATGATGAAAATAAAATAATACATTACAAAAAAAAACTACTTTTTATA GAAAATTATTATATTGGACACATTTTTTTTATAGTTGATTCATTATTATCACTAAATGTG CATCATGCTAATAAAAAGGATTTTACAAATTTAGAAAATAAAGTTTTTAATTTAATAAAA AATAACGAAAATTACATTATCACCAATTTCGATAGTAATGAAATAAAAAGTGTTTTAATA TTTCTATCACAAACAAATAAAATTTATAAAGAATCTTTTATTTATTGCCTTACACACAGA ATAGCAGACTTATATATTAATAATCTTTGTACTGCCAAAATACTAGCTATTTATTTACAT AATTTATTACATTTTACAAAACATAAAATTTCAAAAAAAAACAGATTTAATCATACTATA AGAAATGTTATATATAATACATACCCATGGTTGAATAGTAATAAAAACTCACACAATATC CAAACAACAAATAGTATAAATAGCGAAATAACAAATATCTATAACAATATTAAAGTAAAA AATTATTCGCTTTTGCAATTATTATCAATATATATTTGTAAAAATGTTTATTTTATGAGT TTATCAACTTTAACTTCTATATTAAGATCCTTTTCTTATTTCTCGTTTAATGACGTTAAT TTCTATAACGTTTTTATTCCTTTGTTTATGAAACATATGGACAATTTAGCCAATGTAGAT ATTTTAAACATAACCCAGGCATATAACAAGCGAAAAATTCAAAATAAATATTTTTATTAT TTGCTGTCAAAAGTTTATCAAAGTAAAAGCACAGAAAAAATAAATAATCTTGATCCGCCA ATTAAATTAATTGGCTAA
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  • Fasta :-

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IDSitePeptideScoreMethod
PBANKA_0612100691 SKHKISKKNR0.995unsp

PBANKA_061210      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India