PBANKA_0721400 | conserved Plasmodium protein, unknown function

  • Computed_GO_Component_IDs:        

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  • Computed_GO_Function_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
PBANKA_0721400OTHER0.9997790.0000190.000201
No Results

  • Fasta :-

    >PBANKA_0721400 MNKNTCRSIQQIFEGSTFNKSERKKLAFENEKLNLFFENGIINYSLIELVGSPGSGKTQF VLTLCAEQLIKINKEKKEDIVFYVYFNRTFPIQRLTTIIENKLKLNENNYTNYYIDEKKT NTNKFSNLNHIYSKKYNLNQNEEQENLFSFKTNKNDIVRNLLTNLYIQKIHDENEFFSLF QKDIHSIIKYNKISLLVIDSFNSILNGNENLDSYKKYQLYIKMSLILKQISYENNIFIIL INSSNINKHYSDLSFNISDYIINSSCSNTVIIFKKTKKNNEQVRKMFIKCSEFLRMYKTL TFQITDSGVEVL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0721400.fa Sequence name : PBANKA_0721400 Sequence length : 312 VALUES OF COMPUTED PARAMETERS Coef20 : 3.922 CoefTot : -0.444 ChDiff : 10 ZoneTo : 13 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.753 1.247 0.034 0.529 MesoH : -0.870 0.167 -0.489 0.175 MuHd_075 : 9.409 5.590 2.479 3.433 MuHd_095 : 40.240 20.986 10.430 7.374 MuHd_100 : 38.893 20.800 10.795 7.293 MuHd_105 : 34.913 20.432 10.427 7.250 Hmax_075 : -0.700 2.800 -1.877 2.602 Hmax_095 : 14.787 9.362 1.838 3.657 Hmax_100 : 13.000 9.300 1.985 3.630 Hmax_105 : 8.983 11.667 2.413 3.885 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4476 0.5524 DFMC : 0.6596 0.3404
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 312 PBANKA_0721400 MNKNTCRSIQQIFEGSTFNKSERKKLAFENEKLNLFFENGIINYSLIELVGSPGSGKTQFVLTLCAEQLIKINKEKKEDI 80 VFYVYFNRTFPIQRLTTIIENKLKLNENNYTNYYIDEKKTNTNKFSNLNHIYSKKYNLNQNEEQENLFSFKTNKNDIVRN 160 LLTNLYIQKIHDENEFFSLFQKDIHSIIKYNKISLLVIDSFNSILNGNENLDSYKKYQLYIKMSLILKQISYENNIFIIL 240 INSSNINKHYSDLSFNISDYIINSSCSNTVIIFKKTKKNNEQVRKMFIKCSEFLRMYKTLTFQITDSGVEVL 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................................................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0721400 3 ----MNK|NT 0.070 . PBANKA_0721400 7 MNKNTCR|SI 0.217 . PBANKA_0721400 20 EGSTFNK|SE 0.103 . PBANKA_0721400 23 TFNKSER|KK 0.106 . PBANKA_0721400 24 FNKSERK|KL 0.075 . PBANKA_0721400 25 NKSERKK|LA 0.162 . PBANKA_0721400 32 LAFENEK|LN 0.058 . PBANKA_0721400 57 GSPGSGK|TQ 0.059 . PBANKA_0721400 71 CAEQLIK|IN 0.057 . PBANKA_0721400 74 QLIKINK|EK 0.058 . PBANKA_0721400 76 IKINKEK|KE 0.073 . PBANKA_0721400 77 KINKEKK|ED 0.097 . PBANKA_0721400 88 FYVYFNR|TF 0.082 . PBANKA_0721400 94 RTFPIQR|LT 0.093 . PBANKA_0721400 102 TTIIENK|LK 0.058 . PBANKA_0721400 104 IIENKLK|LN 0.065 . PBANKA_0721400 118 NYYIDEK|KT 0.059 . PBANKA_0721400 119 YYIDEKK|TN 0.086 . PBANKA_0721400 124 KKTNTNK|FS 0.058 . PBANKA_0721400 134 LNHIYSK|KY 0.065 . PBANKA_0721400 135 NHIYSKK|YN 0.101 . PBANKA_0721400 151 ENLFSFK|TN 0.060 . PBANKA_0721400 154 FSFKTNK|ND 0.058 . PBANKA_0721400 159 NKNDIVR|NL 0.089 . PBANKA_0721400 169 TNLYIQK|IH 0.065 . PBANKA_0721400 182 FFSLFQK|DI 0.089 . PBANKA_0721400 189 DIHSIIK|YN 0.068 . PBANKA_0721400 192 SIIKYNK|IS 0.065 . PBANKA_0721400 215 ENLDSYK|KY 0.062 . PBANKA_0721400 216 NLDSYKK|YQ 0.084 . PBANKA_0721400 222 KYQLYIK|MS 0.055 . PBANKA_0721400 228 KMSLILK|QI 0.073 . PBANKA_0721400 248 NSSNINK|HY 0.074 . PBANKA_0721400 274 NTVIIFK|KT 0.062 . PBANKA_0721400 275 TVIIFKK|TK 0.107 . PBANKA_0721400 277 IIFKKTK|KN 0.069 . PBANKA_0721400 278 IFKKTKK|NN 0.151 . PBANKA_0721400 284 KNNEQVR|KM 0.107 . PBANKA_0721400 285 NNEQVRK|MF 0.087 . PBANKA_0721400 289 VRKMFIK|CS 0.077 . PBANKA_0721400 295 KCSEFLR|MY 0.108 . PBANKA_0721400 298 EFLRMYK|TL 0.104 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0721400 ATGAATAAAAATACATGTAGATCAATTCAACAAATATTCGAAGGTTCCACATTTAATAAA TCTGAAAGAAAAAAACTGGCATTTGAAAATGAAAAACTTAATTTATTTTTCGAAAATGGC ATAATTAATTACAGTTTAATAGAACTAGTAGGATCTCCAGGAAGTGGAAAAACACAATTT GTTCTTACATTGTGTGCAGAACAATTGATAAAAATAAATAAAGAAAAAAAGGAAGATATT GTTTTTTATGTTTATTTTAATAGAACTTTTCCAATACAAAGGCTTACAACCATAATAGAG AATAAATTGAAACTCAACGAAAATAATTATACCAATTATTATATAGACGAAAAAAAAACA AATACAAACAAATTCTCAAATTTAAATCACATTTATTCAAAAAAATATAATTTAAACCAA AATGAAGAACAAGAAAATCTCTTTTCATTTAAAACAAATAAAAATGACATTGTAAGAAAT TTATTAACAAATTTATATATTCAAAAAATACATGACGAGAATGAGTTTTTTTCATTATTT CAAAAAGATATACATAGTATTATCAAATATAATAAAATATCATTACTTGTAATTGATTCA TTTAATTCTATACTTAATGGAAATGAAAATTTAGATAGTTATAAAAAATATCAACTATAT ATTAAAATGTCTTTAATTTTAAAACAAATATCATATGAAAATAATATCTTTATTATATTA ATTAATAGTTCAAATATTAACAAGCATTACTCAGATTTATCATTTAACATTTCCGATTAT ATTATCAACTCTTCATGTTCAAATACAGTTATTATTTTTAAAAAAACAAAAAAAAATAAT GAACAAGTCAGAAAAATGTTTATTAAATGTTCAGAATTTTTACGCATGTATAAAACACTT ACATTTCAGATCACGGACTCAGGCGTTGAGGTCCTATGA
  • Download Fasta

  • Fasta :-

    MNKNTCRSIQQIFEGSTFNKSERKKLAFENEKLNLFFENGIINYSLIELVGSPGSGKTQF VLTLCAEQLIKINKEKKEDIVFYVYFNRTFPIQRLTTIIENKLKLNENNYTNYYIDEKKT NTNKFSNLNHIYSKKYNLNQNEEQENLFSFKTNKNDIVRNLLTNLYIQKIHDENEFFSLF QKDIHSIIKYNKISLLVIDSFNSILNGNENLDSYKKYQLYIKMSLILKQISYENNIFIIL INSSNINKHYSDLSFNISDYIINSSCSNTVIIFKKTKKNNEQVRKMFIKCSEFLRMYKTL TFQITDSGVEVL

  • title: ATP binding site
  • coordinates: S52,G56,K57,T58,Y83,Y85,F86,D199,S200
No Results
No Results
IDSitePeptideScoreMethod
PBANKA_0721400231 SLKQISYENN0.991unsp

PBANKA_072140      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India