PBANKA_0819300 | eukaryotic translation initiation factor 3 subunit F, putative

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  • Fasta :-

    >PBANKA_0819300 MSMNKYNFKTMSNLLKDKTPQYFDIQPHTNIKCIVHPSVIFTILDSYLRRDEDQTHVIGT LMGSIIDTNLVEISDCFVDKHSLNEGGFLQIIKDHHETMYELKQKIRPRDQVVGWFCSGS ELSELSCAVHGWFKEHNSISKFYPHSPLNEPIHLLVDASLESGFLNIKAYVQLPINLVKE YFVHFHEIQIEILPCNVERSDVAKITEKVTKGGDNKEKLLNHEIDENSLKKLLIMLKNCK SYVQDVVDKKKKGNVAIGRYLHKVFSNDPFISIEKFDSINESILQDNLMISYLSNLAHLQ FLIAEKLNTSSMQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0819300.fa Sequence name : PBANKA_0819300 Sequence length : 313 VALUES OF COMPUTED PARAMETERS Coef20 : 3.725 CoefTot : -0.430 ChDiff : -5 ZoneTo : 16 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.124 1.365 0.063 0.544 MesoH : -0.491 0.206 -0.446 0.245 MuHd_075 : 16.928 9.136 5.002 2.534 MuHd_095 : 28.288 16.470 7.425 5.338 MuHd_100 : 21.665 14.932 5.121 4.652 MuHd_105 : 15.207 12.974 3.156 3.837 Hmax_075 : 1.517 4.200 -2.430 1.808 Hmax_095 : 4.300 3.300 -2.773 1.840 Hmax_100 : 0.300 2.200 -3.781 1.120 Hmax_105 : -2.013 2.888 -4.399 1.418 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8456 0.1544 DFMC : 0.7745 0.2255
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 313 PBANKA_0819300 MSMNKYNFKTMSNLLKDKTPQYFDIQPHTNIKCIVHPSVIFTILDSYLRRDEDQTHVIGTLMGSIIDTNLVEISDCFVDK 80 HSLNEGGFLQIIKDHHETMYELKQKIRPRDQVVGWFCSGSELSELSCAVHGWFKEHNSISKFYPHSPLNEPIHLLVDASL 160 ESGFLNIKAYVQLPINLVKEYFVHFHEIQIEILPCNVERSDVAKITEKVTKGGDNKEKLLNHEIDENSLKKLLIMLKNCK 240 SYVQDVVDKKKKGNVAIGRYLHKVFSNDPFISIEKFDSINESILQDNLMISYLSNLAHLQFLIAEKLNTSSMQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ......................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0819300 5 --MSMNK|YN 0.065 . PBANKA_0819300 9 MNKYNFK|TM 0.070 . PBANKA_0819300 16 TMSNLLK|DK 0.100 . PBANKA_0819300 18 SNLLKDK|TP 0.058 . PBANKA_0819300 32 QPHTNIK|CI 0.062 . PBANKA_0819300 49 ILDSYLR|RD 0.078 . PBANKA_0819300 50 LDSYLRR|DE 0.236 . PBANKA_0819300 80 SDCFVDK|HS 0.072 . PBANKA_0819300 93 GFLQIIK|DH 0.063 . PBANKA_0819300 103 ETMYELK|QK 0.065 . PBANKA_0819300 105 MYELKQK|IR 0.060 . PBANKA_0819300 107 ELKQKIR|PR 0.119 . PBANKA_0819300 109 KQKIRPR|DQ 0.125 . PBANKA_0819300 134 AVHGWFK|EH 0.057 . PBANKA_0819300 141 EHNSISK|FY 0.068 . PBANKA_0819300 168 SGFLNIK|AY 0.058 . PBANKA_0819300 179 LPINLVK|EY 0.072 . PBANKA_0819300 199 LPCNVER|SD 0.154 . PBANKA_0819300 204 ERSDVAK|IT 0.137 . PBANKA_0819300 208 VAKITEK|VT 0.060 . PBANKA_0819300 211 ITEKVTK|GG 0.080 . PBANKA_0819300 216 TKGGDNK|EK 0.054 . PBANKA_0819300 218 GGDNKEK|LL 0.074 . PBANKA_0819300 230 IDENSLK|KL 0.064 . PBANKA_0819300 231 DENSLKK|LL 0.087 . PBANKA_0819300 237 KLLIMLK|NC 0.056 . PBANKA_0819300 240 IMLKNCK|SY 0.071 . PBANKA_0819300 249 VQDVVDK|KK 0.059 . PBANKA_0819300 250 QDVVDKK|KK 0.100 . PBANKA_0819300 251 DVVDKKK|KG 0.091 . PBANKA_0819300 252 VVDKKKK|GN 0.119 . PBANKA_0819300 259 GNVAIGR|YL 0.140 . PBANKA_0819300 263 IGRYLHK|VF 0.065 . PBANKA_0819300 275 PFISIEK|FD 0.064 . PBANKA_0819300 306 QFLIAEK|LN 0.058 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0819300 ATGAGTATGAATAAATATAATTTTAAAACGATGAGTAACTTGCTGAAAGATAAAACACCT CAGTATTTTGATATACAACCACATACAAATATAAAATGTATTGTACATCCTTCTGTAATA TTTACAATATTAGATTCATACTTAAGAAGGGATGAAGATCAAACTCATGTTATTGGAACT TTGATGGGATCTATAATAGATACTAACTTGGTTGAAATATCAGATTGTTTTGTTGACAAA CATTCACTAAATGAAGGGGGTTTTTTACAAATAATAAAAGATCATCATGAAACAATGTAT GAATTAAAACAAAAAATTCGCCCACGAGATCAAGTTGTTGGATGGTTTTGTTCCGGATCT GAATTATCAGAATTATCGTGTGCAGTTCATGGATGGTTTAAAGAACATAACTCTATTTCA AAATTTTATCCACATTCCCCATTAAATGAACCTATACATTTATTAGTTGATGCATCATTA GAAAGTGGGTTCTTAAATATTAAAGCATATGTACAGTTACCTATTAATTTAGTTAAAGAA TATTTTGTTCATTTTCATGAAATTCAAATTGAAATATTACCATGTAATGTTGAAAGAAGT GATGTTGCTAAAATAACTGAAAAGGTAACAAAAGGTGGAGATAATAAAGAAAAATTATTA AATCACGAAATTGATGAAAATTCGTTAAAAAAATTGTTAATTATGTTAAAAAATTGTAAA TCATATGTACAAGATGTTGTTGATAAAAAAAAAAAAGGAAATGTAGCTATAGGAAGATAT TTACATAAAGTTTTTTCAAATGATCCTTTTATATCAATAGAAAAATTTGATTCTATAAAT GAAAGTATTTTACAAGACAATTTAATGATTTCATATTTATCAAATTTAGCACACTTACAA TTTTTAATTGCAGAAAAATTAAATACCTCTTCTATGCAATGA
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PBANKA_081930      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India