PBANKA_0832600 | proteasome subunit beta type-6, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0832600OTHER0.9999870.0000110.000002
No Results

  • Fasta :-

    >PBANKA_0832600 MEIEPMKIYNINQDSINNEYNIRTPISDGTTIIGIIYEHGVMLACDTRTSSGTFVSNKCS RKINRINENIYVCRSGASAHSQKVIEVIKHYCASMKSENRKKGRFHENEVITDDINDEEI DIDQINNINNNNVIAKNKYYYNDKFMDYNPLVENVAYITKKLIYANNNFLSCGLIFGGYD KIKKQQLYSVNLNGSIIQKYDYAVSGSGSIYIQSYLQDKYKKNMTKKECFDLILNCVKYA IYNDNSSGGIVRILNITKNFVEEYTITNTQIHFDY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0832600.fa Sequence name : PBANKA_0832600 Sequence length : 275 VALUES OF COMPUTED PARAMETERS Coef20 : 2.919 CoefTot : 0.000 ChDiff : 1 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.076 1.271 0.161 0.577 MesoH : -0.877 -0.027 -0.446 0.156 MuHd_075 : 21.730 13.698 5.423 3.111 MuHd_095 : 21.345 15.744 6.965 4.208 MuHd_100 : 21.476 10.800 6.082 3.772 MuHd_105 : 20.019 6.965 5.532 3.239 Hmax_075 : 6.417 2.800 -1.534 2.147 Hmax_095 : 0.300 7.600 -1.500 3.140 Hmax_100 : 4.500 3.700 -0.866 2.860 Hmax_105 : -3.967 3.033 -2.991 2.462 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9711 0.0289 DFMC : 0.9738 0.0262
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 275 PBANKA_0832600 MEIEPMKIYNINQDSINNEYNIRTPISDGTTIIGIIYEHGVMLACDTRTSSGTFVSNKCSRKINRINENIYVCRSGASAH 80 SQKVIEVIKHYCASMKSENRKKGRFHENEVITDDINDEEIDIDQINNINNNNVIAKNKYYYNDKFMDYNPLVENVAYITK 160 KLIYANNNFLSCGLIFGGYDKIKKQQLYSVNLNGSIIQKYDYAVSGSGSIYIQSYLQDKYKKNMTKKECFDLILNCVKYA 240 IYNDNSSGGIVRILNITKNFVEEYTITNTQIHFDY 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0832600 7 MEIEPMK|IY 0.070 . PBANKA_0832600 23 NNEYNIR|TP 0.077 . PBANKA_0832600 48 MLACDTR|TS 0.092 . PBANKA_0832600 58 GTFVSNK|CS 0.070 . PBANKA_0832600 61 VSNKCSR|KI 0.110 . PBANKA_0832600 62 SNKCSRK|IN 0.106 . PBANKA_0832600 65 CSRKINR|IN 0.114 . PBANKA_0832600 74 ENIYVCR|SG 0.119 . PBANKA_0832600 83 ASAHSQK|VI 0.082 . PBANKA_0832600 89 KVIEVIK|HY 0.071 . PBANKA_0832600 96 HYCASMK|SE 0.083 . PBANKA_0832600 100 SMKSENR|KK 0.087 . PBANKA_0832600 101 MKSENRK|KG 0.106 . PBANKA_0832600 102 KSENRKK|GR 0.112 . PBANKA_0832600 104 ENRKKGR|FH 0.165 . PBANKA_0832600 136 NNNVIAK|NK 0.073 . PBANKA_0832600 138 NVIAKNK|YY 0.068 . PBANKA_0832600 144 KYYYNDK|FM 0.064 . PBANKA_0832600 160 NVAYITK|KL 0.064 . PBANKA_0832600 161 VAYITKK|LI 0.108 . PBANKA_0832600 181 IFGGYDK|IK 0.062 . PBANKA_0832600 183 GGYDKIK|KQ 0.060 . PBANKA_0832600 184 GYDKIKK|QQ 0.074 . PBANKA_0832600 199 NGSIIQK|YD 0.074 . PBANKA_0832600 219 QSYLQDK|YK 0.066 . PBANKA_0832600 221 YLQDKYK|KN 0.075 . PBANKA_0832600 222 LQDKYKK|NM 0.103 . PBANKA_0832600 226 YKKNMTK|KE 0.060 . PBANKA_0832600 227 KKNMTKK|EC 0.135 . PBANKA_0832600 238 LILNCVK|YA 0.066 . PBANKA_0832600 252 SSGGIVR|IL 0.086 . PBANKA_0832600 258 RILNITK|NF 0.057 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0832600 ATGGAAATAGAACCCATGAAAATATATAACATAAATCAAGATTCAATTAATAATGAATAT AATATTAGAACTCCTATTTCTGATGGTACAACAATTATTGGAATAATTTATGAACATGGT GTTATGTTAGCTTGTGATACTCGAACATCATCTGGAACATTTGTTAGTAATAAGTGTTCG AGGAAAATAAATAGAATCAATGAAAATATTTATGTATGTAGAAGTGGTGCATCTGCACAT AGCCAAAAAGTAATTGAAGTAATAAAACATTATTGTGCATCTATGAAAAGTGAAAATCGA AAAAAAGGTCGATTTCATGAAAATGAAGTTATAACAGATGATATAAATGATGAAGAAATT GATATTGATCAAATTAATAATATAAATAATAACAATGTAATAGCTAAAAATAAATATTAC TATAATGATAAATTTATGGATTATAACCCATTAGTAGAAAATGTTGCATATATAACAAAA AAACTTATTTATGCAAATAATAATTTTCTGTCATGTGGTTTAATATTTGGTGGTTATGAT AAAATAAAAAAACAACAATTATATTCTGTTAATTTAAATGGTAGTATAATTCAAAAATAC GATTATGCAGTTAGTGGAAGTGGAAGTATTTATATTCAATCTTATTTACAAGATAAATAT AAAAAAAATATGACAAAAAAAGAATGTTTTGATCTTATTTTAAATTGTGTTAAATATGCT ATATATAATGATAATAGCAGTGGTGGAATTGTAAGAATTTTAAATATAACCAAAAATTTT GTAGAAGAATATACTATTACAAATACTCAAATACATTTCGATTATTAA
  • Download Fasta

  • Fasta :-

    MEIEPMKIYNINQDSINNEYNIRTPISDGTTIIGIIYEHGVMLACDTRTSSGTFVSNKCS RKINRINENIYVCRSGASAHSQKVIEVIKHYCASMKSENRKKGRFHENEVITDDINDEEI DIDQINNINNNNVIAKNKYYYNDKFMDYNPLVENVAYITKKLIYANNNFLSCGLIFGGYD KIKKQQLYSVNLNGSIIQKYDYAVSGSGSIYIQSYLQDKYKKNMTKKECFDLILNCVKYA IYNDNSSGGIVRILNITKNFVEEYTITNTQIHFDY

  • title: active site
  • coordinates: T30,D46,R48,K62
No Results
No Results
IDSitePeptideScoreMethod
PBANKA_083260081 SASAHSQKVI0.995unsp

PBANKA_083260      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India