PBANKA_0834400 | mitochondrial-processing peptidase subunit beta, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0834400mTP0.3691680.0000110.630821CS pos: 21-22. RKY-ST. Pr: 0.8318
No Results

  • Fasta :-

    >PBANKA_0834400 MLGKKIRNILGNTLKKYSRKYSTSNLMKEIKNQPLTQITELSNKMKVATIQNNCEVPTIG LWISSGSKYENKTNNGVAHFLEHMIFKGTNKRNRVQLEKEIENMGAHLNAYTAREQTGYY FKCFKDDVKWCIELLSDILTNSIFDEKLIEMEKHVILREMEEVEKSIDEVIFDKLHMTAF RDHPLGYTILGPIENIKNMKKNDILNYIQKNYTSDRMVLCAVGDVDHANIVKLAEQYFSN IKPQDEKGLIFKKEFDKIKPFFCGSEIIIRDDDSGPNAHVAVAFEGVPWASSDSITFMLM QCIIGTYRKNEEGIVPGKLSANRTINNISNKMTVGCADYFTSFNTCYNNTGLFGFYVQCD ELAVEHALGELMFGITSLSYSITDEEVELAKIHLKTQLISMFESSSTLAEEISRQILVYG RPISLAEFIIRLNEIDAEEVKRVAWKYLHDRDIAVAAMGALHGMPQYFDLRQKTYWLRY
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0834400.fa Sequence name : PBANKA_0834400 Sequence length : 479 VALUES OF COMPUTED PARAMETERS Coef20 : 3.969 CoefTot : -0.800 ChDiff : -5 ZoneTo : 28 KR : 8 DE : 0 CleavSite : 22 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.212 1.271 0.108 0.519 MesoH : -0.296 0.409 -0.308 0.250 MuHd_075 : 29.744 16.536 8.699 5.081 MuHd_095 : 54.460 34.410 16.807 12.367 MuHd_100 : 48.111 29.625 14.698 10.958 MuHd_105 : 29.947 19.130 9.995 6.729 Hmax_075 : 11.433 5.300 1.388 1.250 Hmax_095 : 12.900 15.400 2.600 5.364 Hmax_100 : 13.300 14.200 2.879 5.690 Hmax_105 : 5.200 11.600 0.269 3.930 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0921 0.9079 DFMC : 0.1057 0.8943 This protein is probably imported in mitochondria. f(Ser) = 0.1071 f(Arg) = 0.0714 CMi = 0.63025 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 479 PBANKA_0834400 MLGKKIRNILGNTLKKYSRKYSTSNLMKEIKNQPLTQITELSNKMKVATIQNNCEVPTIGLWISSGSKYENKTNNGVAHF 80 LEHMIFKGTNKRNRVQLEKEIENMGAHLNAYTAREQTGYYFKCFKDDVKWCIELLSDILTNSIFDEKLIEMEKHVILREM 160 EEVEKSIDEVIFDKLHMTAFRDHPLGYTILGPIENIKNMKKNDILNYIQKNYTSDRMVLCAVGDVDHANIVKLAEQYFSN 240 IKPQDEKGLIFKKEFDKIKPFFCGSEIIIRDDDSGPNAHVAVAFEGVPWASSDSITFMLMQCIIGTYRKNEEGIVPGKLS 320 ANRTINNISNKMTVGCADYFTSFNTCYNNTGLFGFYVQCDELAVEHALGELMFGITSLSYSITDEEVELAKIHLKTQLIS 400 MFESSSTLAEEISRQILVYGRPISLAEFIIRLNEIDAEEVKRVAWKYLHDRDIAVAAMGALHGMPQYFDLRQKTYWLRY 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............................................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0

  • Fasta :-

    >PBANKA_0834400 ATGTTAGGAAAAAAGATTCGTAATATCTTGGGTAATACACTCAAGAAATATTCTAGAAAA TATAGTACATCAAATTTAATGAAAGAAATAAAAAATCAACCTTTAACTCAAATTACAGAA TTATCAAATAAAATGAAAGTAGCAACAATACAAAATAACTGTGAAGTCCCTACAATAGGA TTATGGATAAGTAGCGGAAGTAAATATGAAAATAAAACGAATAATGGAGTAGCCCATTTT TTAGAACATATGATTTTTAAAGGAACAAATAAAAGAAATAGAGTTCAATTAGAAAAAGAA ATTGAAAATATGGGAGCACACCTAAATGCATATACTGCTAGGGAACAAACAGGATATTAT TTTAAATGTTTTAAAGATGATGTTAAATGGTGTATTGAATTATTAAGTGATATATTAACA AATAGTATATTTGATGAAAAACTGATAGAAATGGAAAAACATGTTATTTTAAGAGAAATG GAAGAAGTTGAAAAATCAATAGATGAAGTTATTTTTGATAAACTGCACATGACTGCATTT AGAGATCATCCACTAGGATATACTATTTTAGGCCCAATAGAAAATATTAAAAATATGAAA AAAAATGATATATTAAATTATATTCAAAAAAATTATACATCAGATCGAATGGTTTTATGT GCCGTTGGCGATGTAGATCATGCTAATATTGTCAAGTTAGCTGAACAATATTTTTCTAAT ATTAAACCACAAGATGAAAAAGGTCTTATTTTTAAAAAAGAATTTGATAAAATTAAACCA TTTTTTTGTGGATCAGAAATTATAATAAGAGATGATGATTCAGGACCAAATGCTCATGTA GCTGTAGCTTTTGAAGGTGTCCCTTGGGCTTCATCAGATTCAATCACATTTATGTTAATG CAATGTATAATAGGAACGTACAGAAAAAATGAAGAAGGTATAGTACCTGGTAAATTATCA GCAAATAGAACGATTAATAATATATCTAATAAAATGACAGTAGGATGTGCTGATTATTTT ACATCATTTAATACATGTTATAATAATACTGGTTTGTTTGGTTTTTATGTACAATGTGAT GAGTTAGCTGTTGAACATGCACTTGGGGAATTAATGTTTGGAATCACTTCTTTAAGTTAT TCTATAACTGATGAAGAAGTTGAACTAGCCAAAATACATCTAAAAACACAACTTATTAGT ATGTTTGAATCATCATCAACTCTAGCAGAAGAAATATCCAGACAAATACTTGTATATGGT CGTCCAATTTCTTTAGCAGAATTTATTATTAGATTAAATGAAATAGATGCTGAAGAAGTT AAAAGAGTTGCTTGGAAATATTTACATGATCGTGATATAGCAGTTGCTGCAATGGGCGCT TTACATGGCATGCCTCAATATTTTGATCTTAGACAAAAAACATATTGGCTTCGATATTAA
  • Download Fasta

  • Fasta :-

    MLGKKIRNILGNTLKKYSRKYSTSNLMKEIKNQPLTQITELSNKMKVATIQNNCEVPTIG LWISSGSKYENKTNNGVAHFLEHMIFKGTNKRNRVQLEKEIENMGAHLNAYTAREQTGYY FKCFKDDVKWCIELLSDILTNSIFDEKLIEMEKHVILREMEEVEKSIDEVIFDKLHMTAF RDHPLGYTILGPIENIKNMKKNDILNYIQKNYTSDRMVLCAVGDVDHANIVKLAEQYFSN IKPQDEKGLIFKKEFDKIKPFFCGSEIIIRDDDSGPNAHVAVAFEGVPWASSDSITFMLM QCIIGTYRKNEEGIVPGKLSANRTINNISNKMTVGCADYFTSFNTCYNNTGLFGFYVQCD ELAVEHALGELMFGITSLSYSITDEEVELAKIHLKTQLISMFESSSTLAEEISRQILVYG RPISLAEFIIRLNEIDAEEVKRVAWKYLHDRDIAVAAMGALHGMPQYFDLRQKTYWLRY

    No Results
No Results
No Results
IDSitePeptideScoreMethod
PBANKA_0834400381 SSLSYSITDE0.997unsp

PBANKA_083440      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India