PBANKA_0906000 | alpha/beta hydrolase, putative

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_IDPredictionOTHERSPmTPCS_Position
PBANKA_0906000OTHER0.9721320.0002450.027623
No Results

  • Fasta :-

    >PBANKA_0906000 MSSGLLYKLNKFYRINKSIYNSFSCGNTILNCKFKGKICTLNGKGANKNRAFFSYGSYNN ADKETVYMIDGISFTMRNNSSIYKEETNDIPILLLHGCYGSKKNFRNFNKMLKSNKIISL DLPNHGESKHTDNMKYNNIEEDIKNVLSKLNIKSCCLVGFSLGGKVSMYTALKNPGLFSH LIIMDILPYNYNSNNIEIALPYSIKKMSKTLYNIKINKNPKNKFEFLTYLKEELPDIPDS FSQFICMSLKENEQKNKLTWNINVETIYNEIHNITNFPLNYEKYKYMNPCSFVIAKKSDL AYTIPDYDQIIKNFFPFSKNFILENSSHAVYVDAPYECAQIINQTITL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0906000.fa Sequence name : PBANKA_0906000 Sequence length : 348 VALUES OF COMPUTED PARAMETERS Coef20 : 4.015 CoefTot : -2.442 ChDiff : 13 ZoneTo : 61 KR : 10 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.188 1.282 0.230 0.489 MesoH : -0.446 0.298 -0.382 0.214 MuHd_075 : 30.651 25.170 10.475 7.402 MuHd_095 : 28.592 19.665 8.444 7.740 MuHd_100 : 37.268 27.352 11.143 9.873 MuHd_105 : 41.884 30.850 12.747 10.504 Hmax_075 : 17.267 17.267 4.916 6.032 Hmax_095 : 8.700 10.900 -0.785 4.500 Hmax_100 : 12.600 18.900 5.476 6.000 Hmax_105 : 15.750 18.550 4.919 5.690 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0534 0.9466 DFMC : 0.0653 0.9347 This protein is probably imported in mitochondria. f(Ser) = 0.1148 f(Arg) = 0.0328 CMi = 0.99010 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 348 PBANKA_0906000 MSSGLLYKLNKFYRINKSIYNSFSCGNTILNCKFKGKICTLNGKGANKNRAFFSYGSYNNADKETVYMIDGISFTMRNNS 80 SIYKEETNDIPILLLHGCYGSKKNFRNFNKMLKSNKIISLDLPNHGESKHTDNMKYNNIEEDIKNVLSKLNIKSCCLVGF 160 SLGGKVSMYTALKNPGLFSHLIIMDILPYNYNSNNIEIALPYSIKKMSKTLYNIKINKNPKNKFEFLTYLKEELPDIPDS 240 FSQFICMSLKENEQKNKLTWNINVETIYNEIHNITNFPLNYEKYKYMNPCSFVIAKKSDLAYTIPDYDQIIKNFFPFSKN 320 FILENSSHAVYVDAPYECAQIINQTITL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0906000 8 SSGLLYK|LN 0.060 . PBANKA_0906000 11 LLYKLNK|FY 0.066 . PBANKA_0906000 14 KLNKFYR|IN 0.118 . PBANKA_0906000 17 KFYRINK|SI 0.219 . PBANKA_0906000 33 NTILNCK|FK 0.067 . PBANKA_0906000 35 ILNCKFK|GK 0.088 . PBANKA_0906000 37 NCKFKGK|IC 0.068 . PBANKA_0906000 44 ICTLNGK|GA 0.069 . PBANKA_0906000 48 NGKGANK|NR 0.052 . PBANKA_0906000 50 KGANKNR|AF 0.122 . PBANKA_0906000 63 SYNNADK|ET 0.068 . PBANKA_0906000 77 GISFTMR|NN 0.159 . PBANKA_0906000 84 NNSSIYK|EE 0.064 . PBANKA_0906000 102 HGCYGSK|KN 0.061 . PBANKA_0906000 103 GCYGSKK|NF 0.097 . PBANKA_0906000 106 GSKKNFR|NF 0.128 . PBANKA_0906000 110 NFRNFNK|ML 0.064 . PBANKA_0906000 113 NFNKMLK|SN 0.073 . PBANKA_0906000 116 KMLKSNK|II 0.070 . PBANKA_0906000 129 PNHGESK|HT 0.070 . PBANKA_0906000 135 KHTDNMK|YN 0.079 . PBANKA_0906000 144 NIEEDIK|NV 0.065 . PBANKA_0906000 149 IKNVLSK|LN 0.072 . PBANKA_0906000 153 LSKLNIK|SC 0.079 . PBANKA_0906000 165 GFSLGGK|VS 0.055 . PBANKA_0906000 173 SMYTALK|NP 0.056 . PBANKA_0906000 205 ALPYSIK|KM 0.066 . PBANKA_0906000 206 LPYSIKK|MS 0.099 . PBANKA_0906000 209 SIKKMSK|TL 0.066 . PBANKA_0906000 215 KTLYNIK|IN 0.054 . PBANKA_0906000 218 YNIKINK|NP 0.058 . PBANKA_0906000 221 KINKNPK|NK 0.070 . PBANKA_0906000 223 NKNPKNK|FE 0.066 . PBANKA_0906000 231 EFLTYLK|EE 0.051 . PBANKA_0906000 250 FICMSLK|EN 0.067 . PBANKA_0906000 255 LKENEQK|NK 0.062 . PBANKA_0906000 257 ENEQKNK|LT 0.069 . PBANKA_0906000 283 FPLNYEK|YK 0.062 . PBANKA_0906000 285 LNYEKYK|YM 0.077 . PBANKA_0906000 296 CSFVIAK|KS 0.069 . PBANKA_0906000 297 SFVIAKK|SD 0.107 . PBANKA_0906000 312 DYDQIIK|NF 0.056 . PBANKA_0906000 319 NFFPFSK|NF 0.060 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0906000 ATGAGTAGTGGATTGTTATATAAGTTAAACAAATTTTACCGGATAAATAAGAGTATATAT AATTCATTTAGCTGTGGAAATACTATTTTGAATTGTAAATTCAAAGGTAAAATATGCACA CTAAATGGAAAAGGCGCAAATAAAAATAGAGCATTTTTTTCTTATGGGTCATATAATAAT GCTGATAAAGAAACTGTATATATGATTGATGGAATATCTTTTACAATGCGTAATAATAGT AGTATATATAAAGAAGAAACAAATGATATTCCTATTTTATTATTACATGGTTGTTATGGA AGTAAAAAAAATTTCCGTAATTTTAATAAAATGCTTAAATCAAATAAAATAATATCATTA GACTTACCAAACCATGGAGAGTCTAAACATACAGATAATATGAAATATAATAATATAGAA GAAGATATAAAAAATGTATTAAGTAAATTAAATATAAAAAGTTGTTGTTTAGTTGGTTTT AGTTTGGGTGGAAAAGTATCCATGTATACTGCATTAAAAAATCCAGGGTTATTTTCACAT TTAATAATAATGGATATATTACCTTATAATTATAATTCTAATAATATAGAAATTGCATTA CCTTATAGTATTAAAAAAATGAGTAAAACATTATATAATATAAAAATAAATAAAAATCCG AAAAATAAATTCGAATTTTTAACATATTTAAAGGAAGAATTACCAGATATTCCAGATTCA TTTTCACAATTTATTTGTATGTCACTTAAAGAAAATGAACAAAAAAATAAATTAACATGG AATATAAATGTTGAAACTATATATAATGAAATTCATAATATTACAAATTTCCCATTAAAT TATGAAAAATATAAATATATGAATCCCTGTAGTTTTGTTATAGCAAAAAAATCAGATCTG GCTTATACTATACCCGATTATGATCAAATTATTAAAAATTTTTTTCCTTTCTCTAAAAAT TTTATTTTGGAAAATTCATCTCATGCCGTATATGTAGACGCACCCTATGAATGCGCTCAA ATTATTAACCAAACAATTACCTTATAA
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  • Fasta :-

    MSSGLLYKLNKFYRINKSIYNSFSCGNTILNCKFKGKICTLNGKGANKNRAFFSYGSYNN ADKETVYMIDGISFTMRNNSSIYKEETNDIPILLLHGCYGSKKNFRNFNKMLKSNKIISL DLPNHGESKHTDNMKYNNIEEDIKNVLSKLNIKSCCLVGFSLGGKVSMYTALKNPGLFSH LIIMDILPYNYNSNNIEIALPYSIKKMSKTLYNIKINKNPKNKFEFLTYLKEELPDIPDS FSQFICMSLKENEQKNKLTWNINVETIYNEIHNITNFPLNYEKYKYMNPCSFVIAKKSDL AYTIPDYDQIIKNFFPFSKNFILENSSHAVYVDAPYECAQIINQTITL

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PBANKA_090600      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India