PBANKA_0915000 | apical membrane antigen 1

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  • Fasta :-

    >PBANKA_0915000 MKEIYYILILCSIYLINLSNCSEGPNNVISENGHINYDMIQKENTERSTKLINPWEKYME KYDIEKMHGSGIRVDLGEDARVENRDYRIPSGKCPVIGKGITIQNSEVSFLTPVATGDQS VRSGGLALPKTDVHLSPITIDNLKTMYKEHPEIVKLNNMSLCAKHTSFYVPGNNANSAYR HPAVYDKSNSTCYMLYVAAQENMGPRYCSNNANNDNQPFCFTPEKIEKYKNLSYLTKNLR DDWETSCPNKSIKNAKFGIWVDGYCKDYQKHTVHDSDSLLKCNQIIFNESASDQPKQYEK HLEDTTKFRQGVAERNGKLIGEALLPIGSYKSDQIKSHGRGYNWGNYDSQNKKCYIFETK PTCLINDRNFIATTALSSTEEFEEQFPCDIYKNKINEEIKVLNKNISNGNNSIEFPRIFI STDKNSLNCPCEPTQLTESSCNFYVCNCVEKRQYIAENNDVEIKEEFRSEYESPSNQRVI VIIIFICVGIILVILLVGYFFKSNKKGENYDRMGQADIYGKANSRKDEMLDPEVSFWGED KRASHTTPVLMQKPYY
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0915000.fa Sequence name : PBANKA_0915000 Sequence length : 556 VALUES OF COMPUTED PARAMETERS Coef20 : 4.142 CoefTot : -0.261 ChDiff : -5 ZoneTo : 22 KR : 1 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.806 3.841 0.841 1.163 MesoH : -0.790 0.359 -0.379 0.176 MuHd_075 : 17.969 10.143 5.414 4.117 MuHd_095 : 21.933 15.815 7.561 3.555 MuHd_100 : 23.948 16.407 7.758 3.756 MuHd_105 : 19.374 11.653 6.790 2.647 Hmax_075 : 16.567 23.100 4.402 7.770 Hmax_095 : 17.800 22.800 5.846 6.510 Hmax_100 : 20.000 24.800 5.753 7.030 Hmax_105 : 15.900 21.600 5.376 6.379 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9995 0.0005 DFMC : 0.9997 0.0003
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 556 PBANKA_0915000 MKEIYYILILCSIYLINLSNCSEGPNNVISENGHINYDMIQKENTERSTKLINPWEKYMEKYDIEKMHGSGIRVDLGEDA 80 RVENRDYRIPSGKCPVIGKGITIQNSEVSFLTPVATGDQSVRSGGLALPKTDVHLSPITIDNLKTMYKEHPEIVKLNNMS 160 LCAKHTSFYVPGNNANSAYRHPAVYDKSNSTCYMLYVAAQENMGPRYCSNNANNDNQPFCFTPEKIEKYKNLSYLTKNLR 240 DDWETSCPNKSIKNAKFGIWVDGYCKDYQKHTVHDSDSLLKCNQIIFNESASDQPKQYEKHLEDTTKFRQGVAERNGKLI 320 GEALLPIGSYKSDQIKSHGRGYNWGNYDSQNKKCYIFETKPTCLINDRNFIATTALSSTEEFEEQFPCDIYKNKINEEIK 400 VLNKNISNGNNSIEFPRIFISTDKNSLNCPCEPTQLTESSCNFYVCNCVEKRQYIAENNDVEIKEEFRSEYESPSNQRVI 480 VIIIFICVGIILVILLVGYFFKSNKKGENYDRMGQADIYGKANSRKDEMLDPEVSFWGEDKRASHTTPVLMQKPYY 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ............................................................................ 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0915000 2 -----MK|EI 0.070 . PBANKA_0915000 42 NYDMIQK|EN 0.053 . PBANKA_0915000 47 QKENTER|ST 0.130 . PBANKA_0915000 50 NTERSTK|LI 0.150 . PBANKA_0915000 57 LINPWEK|YM 0.075 . PBANKA_0915000 61 WEKYMEK|YD 0.071 . PBANKA_0915000 66 EKYDIEK|MH 0.068 . PBANKA_0915000 73 MHGSGIR|VD 0.074 . PBANKA_0915000 81 DLGEDAR|VE 0.068 . PBANKA_0915000 85 DARVENR|DY 0.088 . PBANKA_0915000 88 VENRDYR|IP 0.263 . PBANKA_0915000 93 YRIPSGK|CP 0.069 . PBANKA_0915000 99 KCPVIGK|GI 0.072 . PBANKA_0915000 122 TGDQSVR|SG 0.139 . PBANKA_0915000 130 GGLALPK|TD 0.055 . PBANKA_0915000 144 ITIDNLK|TM 0.058 . PBANKA_0915000 148 NLKTMYK|EH 0.059 . PBANKA_0915000 155 EHPEIVK|LN 0.060 . PBANKA_0915000 164 NMSLCAK|HT 0.084 . PBANKA_0915000 180 NANSAYR|HP 0.086 . PBANKA_0915000 187 HPAVYDK|SN 0.108 . PBANKA_0915000 206 QENMGPR|YC 0.105 . PBANKA_0915000 225 FCFTPEK|IE 0.055 . PBANKA_0915000 228 TPEKIEK|YK 0.070 . PBANKA_0915000 230 EKIEKYK|NL 0.075 . PBANKA_0915000 237 NLSYLTK|NL 0.076 . PBANKA_0915000 240 YLTKNLR|DD 0.070 . PBANKA_0915000 250 ETSCPNK|SI 0.101 . PBANKA_0915000 253 CPNKSIK|NA 0.089 . PBANKA_0915000 256 KSIKNAK|FG 0.082 . PBANKA_0915000 266 WVDGYCK|DY 0.061 . PBANKA_0915000 270 YCKDYQK|HT 0.059 . PBANKA_0915000 281 DSDSLLK|CN 0.061 . PBANKA_0915000 296 SASDQPK|QY 0.103 . PBANKA_0915000 300 QPKQYEK|HL 0.072 . PBANKA_0915000 307 HLEDTTK|FR 0.070 . PBANKA_0915000 309 EDTTKFR|QG 0.092 . PBANKA_0915000 315 RQGVAER|NG 0.080 . PBANKA_0915000 318 VAERNGK|LI 0.146 . PBANKA_0915000 331 LPIGSYK|SD 0.090 . PBANKA_0915000 336 YKSDQIK|SH 0.129 . PBANKA_0915000 340 QIKSHGR|GY 0.111 . PBANKA_0915000 352 NYDSQNK|KC 0.057 . PBANKA_0915000 353 YDSQNKK|CY 0.108 . PBANKA_0915000 360 CYIFETK|PT 0.062 . PBANKA_0915000 368 TCLINDR|NF 0.074 . PBANKA_0915000 392 FPCDIYK|NK 0.067 . PBANKA_0915000 394 CDIYKNK|IN 0.071 . PBANKA_0915000 400 KINEEIK|VL 0.066 . PBANKA_0915000 404 EIKVLNK|NI 0.069 . PBANKA_0915000 417 NSIEFPR|IF 0.087 . PBANKA_0915000 424 IFISTDK|NS 0.054 . PBANKA_0915000 451 VCNCVEK|RQ 0.067 . PBANKA_0915000 452 CNCVEKR|QY 0.211 . PBANKA_0915000 464 NNDVEIK|EE 0.063 . PBANKA_0915000 468 EIKEEFR|SE 0.101 . PBANKA_0915000 478 ESPSNQR|VI 0.084 . PBANKA_0915000 502 LVGYFFK|SN 0.111 . PBANKA_0915000 505 YFFKSNK|KG 0.062 . PBANKA_0915000 506 FFKSNKK|GE 0.078 . PBANKA_0915000 512 KGENYDR|MG 0.083 . PBANKA_0915000 521 QADIYGK|AN 0.070 . PBANKA_0915000 525 YGKANSR|KD 0.074 . PBANKA_0915000 526 GKANSRK|DE 0.103 . PBANKA_0915000 541 SFWGEDK|RA 0.071 . PBANKA_0915000 542 FWGEDKR|AS 0.191 . PBANKA_0915000 553 TPVLMQK|PY 0.070 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0915000 ATGAAAGAAATATATTATATCTTAATTTTATGCTCTATTTATCTAATAAACCTGAGCAAT TGTTCCGAAGGTCCAAATAATGTTATTTCAGAAAATGGTCATATTAATTATGATATGATT CAAAAGGAAAATACTGAAAGAAGTACTAAACTAATTAATCCATGGGAAAAGTATATGGAA AAATATGATATAGAAAAGATGCATGGTTCTGGTATAAGAGTTGATTTAGGTGAAGATGCA CGTGTGGAAAATCGTGATTATAGAATACCTTCAGGTAAATGTCCAGTTATAGGGAAAGGT ATAACTATTCAAAATTCTGAAGTATCATTTTTAACACCAGTAGCTACCGGTGATCAGTCA GTGAGAAGTGGAGGTTTAGCACTTCCTAAAACAGATGTACACCTTTCTCCTATAACAATT GATAATCTCAAAACAATGTATAAAGAACATCCAGAAATAGTAAAATTAAATAATATGTCA TTGTGTGCAAAACATACCTCATTTTATGTTCCCGGTAACAATGCCAATTCAGCATATAGA CACCCCGCTGTTTATGATAAATCTAATAGTACTTGCTACATGTTGTATGTAGCAGCCCAA GAAAATATGGGTCCAAGATATTGTAGTAATAATGCAAATAATGATAATCAACCATTTTGT TTTACACCCGAAAAAATAGAAAAATATAAAAATTTATCCTATTTAACTAAAAATTTGCGT GATGATTGGGAAACCAGTTGTCCTAATAAAAGTATAAAAAATGCTAAATTTGGAATTTGG GTTGATGGTTATTGTAAAGATTATCAAAAGCATACAGTTCATGATAGTGATTCATTATTA AAATGTAATCAAATTATTTTTAACGAAAGTGCTTCTGATCAACCTAAACAATATGAAAAA CACCTAGAAGATACTACCAAATTTCGACAAGGAGTTGCAGAGAGGAATGGTAAACTTATA GGTGAAGCTTTATTACCAATAGGATCTTATAAATCAGATCAAATTAAAAGCCATGGAAGG GGATATAACTGGGGAAATTATGATAGTCAAAACAAAAAATGTTACATTTTCGAAACAAAA CCAACATGTTTAATTAATGATAGGAATTTCATTGCAACAACTGCTTTATCTAGTACAGAA GAGTTCGAAGAACAATTTCCTTGTGATATATATAAAAATAAAATAAACGAAGAAATTAAA GTCTTGAACAAAAACATCTCTAATGGAAATAATTCCATTGAATTTCCTAGGATATTTATT TCAACTGACAAAAATAGTTTAAATTGCCCATGTGAACCTACGCAACTGACTGAGAGCAGT TGTAATTTTTATGTGTGTAATTGTGTAGAGAAAAGACAATATATAGCTGAGAATAATGAT GTTGAAATAAAAGAAGAGTTTAGAAGTGAATATGAAAGCCCATCAAACCAGAGAGTAATA GTTATTATAATTTTTATTTGTGTTGGAATTATATTAGTTATTCTATTAGTGGGTTATTTC TTTAAAAGTAATAAAAAAGGTGAAAATTATGATAGAATGGGTCAAGCAGATATTTATGGT AAAGCTAATTCCAGAAAAGATGAAATGTTAGACCCAGAAGTGTCATTTTGGGGTGAAGAT AAAAGGGCATCACACACAACACCCGTTTTGATGCAAAAACCATATTATTAA
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_0915000290 SIFNESASDQ0.994unspPBANKA_0915000290 SIFNESASDQ0.994unspPBANKA_0915000290 SIFNESASDQ0.994unspPBANKA_0915000378 STALSSTEEF0.997unspPBANKA_0915000469 SEEFRSEYES0.994unspPBANKA_0915000473 SSEYESPSNQ0.997unspPBANKA_0915000524 SGKANSRKDE0.997unspPBANKA_0915000544 SDKRASHTTP0.991unspPBANKA_091500091 SYRIPSGKCP0.995unspPBANKA_0915000251 SCPNKSIKNA0.991unsp

PBANKA_091500      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India