PBANKA_0930900 | ubiquitin carboxyl-terminal hydrolase UCH54, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0930900OTHER0.9999900.0000070.000003
No Results

  • Fasta :-

    >PBANKA_0930900 MQSENDSIGEWCLIESNPCIFYEMLKQMGAKDLSAEDVYDLEYFDNYINNKDEITIENIL SIQEYRSEKEKEAGLESEMGTEPYQNDTDLENKYNKLLHNFSHVFGIIFLFNIGKTYDRK RYKEHNVPENLFFAKQVIPNACATQAILSIIFNKNIKLNENIENIKTFSTNFDSTMKGLT LSNCNFLRNIHNSFKTPIYIENDDLYHDTKKESNSFHFVSYIEFEKNVYLLDGLQEGPIL ITDKNYDEKKKLDNNWINIARNHIKKDIDIMNNSEEDTENRFNILTIIKDKQCIIEEYIN IHRILKQRTNIKLVSLGENIELNDEINEDDYSFSNKIPSIDKLTSDIEKLHNISKKSSIE INYLEKLLTKEIELKASWDKERTFKFFNFYPFIISSINLMAKHKILKPSYEKEKQKRNI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0930900.fa Sequence name : PBANKA_0930900 Sequence length : 419 VALUES OF COMPUTED PARAMETERS Coef20 : 3.364 CoefTot : -0.043 ChDiff : -15 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.241 1.512 0.117 0.667 MesoH : -0.909 0.008 -0.551 0.113 MuHd_075 : 22.191 14.284 7.804 3.690 MuHd_095 : 14.360 9.664 5.186 1.993 MuHd_100 : 11.252 7.133 3.535 2.496 MuHd_105 : 7.779 4.700 1.852 2.810 Hmax_075 : 4.100 8.517 0.723 4.387 Hmax_095 : 2.888 3.938 -0.349 1.934 Hmax_100 : 1.200 0.700 -0.848 2.070 Hmax_105 : 3.700 4.100 -1.809 3.450 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9867 0.0133 DFMC : 0.9820 0.0180
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 419 PBANKA_0930900 MQSENDSIGEWCLIESNPCIFYEMLKQMGAKDLSAEDVYDLEYFDNYINNKDEITIENILSIQEYRSEKEKEAGLESEMG 80 TEPYQNDTDLENKYNKLLHNFSHVFGIIFLFNIGKTYDRKRYKEHNVPENLFFAKQVIPNACATQAILSIIFNKNIKLNE 160 NIENIKTFSTNFDSTMKGLTLSNCNFLRNIHNSFKTPIYIENDDLYHDTKKESNSFHFVSYIEFEKNVYLLDGLQEGPIL 240 ITDKNYDEKKKLDNNWINIARNHIKKDIDIMNNSEEDTENRFNILTIIKDKQCIIEEYINIHRILKQRTNIKLVSLGENI 320 ELNDEINEDDYSFSNKIPSIDKLTSDIEKLHNISKKSSIEINYLEKLLTKEIELKASWDKERTFKFFNFYPFIISSINLM 400 AKHKILKPSYEKEKQKRNI 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0930900 26 IFYEMLK|QM 0.066 . PBANKA_0930900 31 LKQMGAK|DL 0.098 . PBANKA_0930900 51 DNYINNK|DE 0.075 . PBANKA_0930900 66 LSIQEYR|SE 0.154 . PBANKA_0930900 69 QEYRSEK|EK 0.191 . PBANKA_0930900 71 YRSEKEK|EA 0.101 . PBANKA_0930900 93 DTDLENK|YN 0.054 . PBANKA_0930900 96 LENKYNK|LL 0.067 . PBANKA_0930900 115 FLFNIGK|TY 0.064 . PBANKA_0930900 119 IGKTYDR|KR 0.072 . PBANKA_0930900 120 GKTYDRK|RY 0.069 . PBANKA_0930900 121 KTYDRKR|YK 0.258 . PBANKA_0930900 123 YDRKRYK|EH 0.067 . PBANKA_0930900 135 ENLFFAK|QV 0.087 . PBANKA_0930900 154 LSIIFNK|NI 0.071 . PBANKA_0930900 157 IFNKNIK|LN 0.072 . PBANKA_0930900 166 ENIENIK|TF 0.067 . PBANKA_0930900 177 NFDSTMK|GL 0.060 . PBANKA_0930900 188 SNCNFLR|NI 0.159 . PBANKA_0930900 195 NIHNSFK|TP 0.068 . PBANKA_0930900 210 DLYHDTK|KE 0.067 . PBANKA_0930900 211 LYHDTKK|ES 0.087 . PBANKA_0930900 226 SYIEFEK|NV 0.062 . PBANKA_0930900 244 PILITDK|NY 0.059 . PBANKA_0930900 249 DKNYDEK|KK 0.061 . PBANKA_0930900 250 KNYDEKK|KL 0.104 . PBANKA_0930900 251 NYDEKKK|LD 0.085 . PBANKA_0930900 261 NWINIAR|NH 0.085 . PBANKA_0930900 265 IARNHIK|KD 0.083 . PBANKA_0930900 266 ARNHIKK|DI 0.271 . PBANKA_0930900 281 EEDTENR|FN 0.072 . PBANKA_0930900 289 NILTIIK|DK 0.062 . PBANKA_0930900 291 LTIIKDK|QC 0.068 . PBANKA_0930900 303 EYINIHR|IL 0.072 . PBANKA_0930900 306 NIHRILK|QR 0.098 . PBANKA_0930900 308 HRILKQR|TN 0.107 . PBANKA_0930900 312 KQRTNIK|LV 0.097 . PBANKA_0930900 336 DYSFSNK|IP 0.071 . PBANKA_0930900 342 KIPSIDK|LT 0.071 . PBANKA_0930900 349 LTSDIEK|LH 0.064 . PBANKA_0930900 355 KLHNISK|KS 0.072 . PBANKA_0930900 356 LHNISKK|SS 0.224 . PBANKA_0930900 366 EINYLEK|LL 0.064 . PBANKA_0930900 370 LEKLLTK|EI 0.063 . PBANKA_0930900 375 TKEIELK|AS 0.086 . PBANKA_0930900 380 LKASWDK|ER 0.064 . PBANKA_0930900 382 ASWDKER|TF 0.084 . PBANKA_0930900 385 DKERTFK|FF 0.150 . PBANKA_0930900 402 SINLMAK|HK 0.069 . PBANKA_0930900 404 NLMAKHK|IL 0.071 . PBANKA_0930900 407 AKHKILK|PS 0.075 . PBANKA_0930900 412 LKPSYEK|EK 0.053 . PBANKA_0930900 414 PSYEKEK|QK 0.071 . PBANKA_0930900 416 YEKEKQK|RN 0.066 . PBANKA_0930900 417 EKEKQKR|NI 0.248 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0930900 ATGCAAAGTGAAAATGATAGCATTGGGGAGTGGTGCTTAATTGAAAGTAATCCCTGCATA TTTTATGAAATGTTAAAACAAATGGGAGCAAAAGATTTATCAGCTGAAGATGTGTATGAT TTAGAATATTTTGATAATTATATAAATAATAAAGATGAAATAACAATTGAAAATATATTA AGCATACAGGAATACAGAAGTGAAAAAGAAAAAGAAGCAGGATTAGAATCCGAAATGGGA ACAGAACCATATCAGAATGATACAGATTTAGAAAATAAGTATAATAAACTTTTACATAAT TTTTCTCATGTATTTGGAATAATATTTTTATTTAATATAGGCAAAACTTATGATAGAAAA AGATATAAAGAACATAATGTCCCTGAAAATTTATTTTTTGCTAAACAAGTTATTCCAAAT GCATGTGCAACGCAAGCTATATTGTCCATTATATTTAACAAAAATATAAAATTAAATGAA AATATAGAAAATATAAAAACATTTAGCACAAATTTTGATAGTACTATGAAAGGATTAACA TTATCTAATTGTAATTTTTTGCGAAATATTCATAATTCTTTTAAAACTCCGATATATATA GAAAATGATGATTTATATCACGACACAAAAAAAGAATCAAATTCTTTCCATTTTGTATCA TATATCGAATTTGAAAAAAATGTATATTTATTAGATGGTTTGCAAGAAGGACCGATATTA ATTACAGATAAAAATTATGATGAAAAAAAAAAGTTGGATAATAATTGGATAAATATAGCA CGGAATCATATAAAAAAAGACATAGATATTATGAACAACTCTGAAGAAGATACAGAAAAC AGATTTAACATTTTGACAATAATAAAGGATAAACAATGTATAATCGAAGAATATATAAAT ATACATAGAATATTAAAACAAAGAACAAATATTAAGCTCGTAAGTTTAGGAGAAAATATA GAATTAAATGATGAAATAAATGAAGATGATTATTCTTTTTCTAATAAAATACCTAGTATT GATAAACTCACATCTGATATTGAGAAATTACATAATATTTCAAAAAAATCATCAATTGAA ATTAATTATTTAGAAAAACTTTTGACCAAAGAAATAGAACTTAAAGCTTCTTGGGATAAA GAACGAACTTTTAAATTTTTTAATTTTTATCCATTCATAATATCCTCCATAAATTTAATG GCTAAACATAAAATCTTGAAACCATCCTATGAAAAAGAAAAGCAAAAACGAAACATTTAA
  • Download Fasta

  • Fasta :-

    MQSENDSIGEWCLIESNPCIFYEMLKQMGAKDLSAEDVYDLEYFDNYINNKDEITIENIL SIQEYRSEKEKEAGLESEMGTEPYQNDTDLENKYNKLLHNFSHVFGIIFLFNIGKTYDRK RYKEHNVPENLFFAKQVIPNACATQAILSIIFNKNIKLNENIENIKTFSTNFDSTMKGLT LSNCNFLRNIHNSFKTPIYIENDDLYHDTKKESNSFHFVSYIEFEKNVYLLDGLQEGPIL ITDKNYDEKKKLDNNWINIARNHIKKDIDIMNNSEEDTENRFNILTIIKDKQCIIEEYIN IHRILKQRTNIKLVSLGENIELNDEINEDDYSFSNKIPSIDKLTSDIEKLHNISKKSSIE INYLEKLLTKEIELKASWDKERTFKFFNFYPFIISSINLMAKHKILKPSYEKEKQKRNI

  • title: catalytic site
  • coordinates: Q136,C142,H217,D232
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_0930900274 SIMNNSEEDT0.997unspPBANKA_0930900274 SIMNNSEEDT0.997unspPBANKA_0930900274 SIMNNSEEDT0.997unspPBANKA_0930900409 SILKPSYEKE0.991unspPBANKA_093090034 SAKDLSAEDV0.994unspPBANKA_093090067 SQEYRSEKEK0.998unsp

PBANKA_093090      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India