PBANKA_0931800 | pyridoxine biosynthesis protein PDX2, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0931800OTHER0.9412730.0455840.013143
No Results

  • Fasta :-

    >PBANKA_0931800 MEKLTIGVLSLQGNFQSHINHFLQLQNPSLKVIEVRNKTNLRECDGIVIPGGESTTLRKC MSYDNDSLYNALKNYIHVKKKPVWGTCAGCILLSEKVEKNKDDNIENEYGNDFSLGGLDI EITRNYYGSQNDSFICSLDIKSQDPIFKKNIRAPCIRAPFIKKISSDKVVTIATFSHESF GKNIIGAVEQDNCMGTIFHPELMPYTCFHDYFLEKVKKHIKDSREA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0931800.fa Sequence name : PBANKA_0931800 Sequence length : 226 VALUES OF COMPUTED PARAMETERS Coef20 : 3.564 CoefTot : -1.644 ChDiff : 1 ZoneTo : 33 KR : 2 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.718 0.694 -0.091 0.376 MesoH : -0.924 0.083 -0.471 0.135 MuHd_075 : 22.647 15.885 7.482 4.987 MuHd_095 : 24.528 21.191 6.927 6.014 MuHd_100 : 28.760 23.701 8.853 7.075 MuHd_105 : 29.713 23.804 10.078 7.067 Hmax_075 : 16.917 16.450 0.211 3.940 Hmax_095 : 8.400 16.012 -0.388 6.282 Hmax_100 : 12.600 18.400 1.682 5.170 Hmax_105 : 12.717 15.500 0.601 3.920 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8218 0.1782 DFMC : 0.7990 0.2010
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 226 PBANKA_0931800 MEKLTIGVLSLQGNFQSHINHFLQLQNPSLKVIEVRNKTNLRECDGIVIPGGESTTLRKCMSYDNDSLYNALKNYIHVKK 80 KPVWGTCAGCILLSEKVEKNKDDNIENEYGNDFSLGGLDIEITRNYYGSQNDSFICSLDIKSQDPIFKKNIRAPCIRAPF 160 IKKISSDKVVTIATFSHESFGKNIIGAVEQDNCMGTIFHPELMPYTCFHDYFLEKVKKHIKDSREA 240 ................................................................................ 80 ................................................................................ 160 .................................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0931800 3 ----MEK|LT 0.065 . PBANKA_0931800 31 LQNPSLK|VI 0.070 . PBANKA_0931800 36 LKVIEVR|NK 0.089 . PBANKA_0931800 38 VIEVRNK|TN 0.059 . PBANKA_0931800 42 RNKTNLR|EC 0.089 . PBANKA_0931800 58 GESTTLR|KC 0.104 . PBANKA_0931800 59 ESTTLRK|CM 0.075 . PBANKA_0931800 73 SLYNALK|NY 0.064 . PBANKA_0931800 79 KNYIHVK|KK 0.068 . PBANKA_0931800 80 NYIHVKK|KP 0.092 . PBANKA_0931800 81 YIHVKKK|PV 0.186 . PBANKA_0931800 96 CILLSEK|VE 0.055 . PBANKA_0931800 99 LSEKVEK|NK 0.077 . PBANKA_0931800 101 EKVEKNK|DD 0.072 . PBANKA_0931800 124 LDIEITR|NY 0.085 . PBANKA_0931800 141 ICSLDIK|SQ 0.093 . PBANKA_0931800 148 SQDPIFK|KN 0.063 . PBANKA_0931800 149 QDPIFKK|NI 0.089 . PBANKA_0931800 152 IFKKNIR|AP 0.077 . PBANKA_0931800 157 IRAPCIR|AP 0.104 . PBANKA_0931800 162 IRAPFIK|KI 0.083 . PBANKA_0931800 163 RAPFIKK|IS 0.129 . PBANKA_0931800 168 KKISSDK|VV 0.082 . PBANKA_0931800 182 SHESFGK|NI 0.077 . PBANKA_0931800 215 HDYFLEK|VK 0.062 . PBANKA_0931800 217 YFLEKVK|KH 0.055 . PBANKA_0931800 218 FLEKVKK|HI 0.139 . PBANKA_0931800 221 KVKKHIK|DS 0.075 . PBANKA_0931800 224 KHIKDSR|EA 0.113 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0931800 ATGGAAAAACTAACTATAGGTGTTTTATCTCTACAAGGAAATTTCCAATCACATATAAAT CATTTTCTTCAGTTACAAAATCCATCACTTAAAGTTATAGAGGTTAGGAATAAAACTAAT TTAAGGGAATGTGATGGAATAGTGATACCTGGAGGAGAATCAACAACATTAAGAAAATGC ATGTCATACGATAATGACTCCTTATATAACGCCTTGAAAAATTATATTCATGTTAAAAAA AAACCTGTGTGGGGTACTTGTGCTGGATGTATTTTACTATCAGAAAAAGTTGAAAAAAAC AAGGATGATAATATTGAAAATGAATATGGAAATGATTTTTCCTTGGGAGGCTTGGATATA GAAATTACACGAAATTATTATGGATCTCAGAATGATAGCTTTATTTGCTCATTAGATATA AAATCTCAAGATCCTATTTTTAAAAAAAATATTAGAGCACCATGTATAAGAGCACCATTT ATAAAAAAAATATCATCAGACAAGGTTGTAACAATTGCAACATTTTCACATGAATCATTT GGAAAAAATATCATAGGAGCGGTTGAACAAGACAATTGTATGGGAACAATTTTTCACCCA GAATTAATGCCATATACATGTTTTCATGATTATTTTCTTGAAAAGGTTAAAAAACATATA AAGGATTCAAGAGAAGCATAA
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  • Fasta :-

    MEKLTIGVLSLQGNFQSHINHFLQLQNPSLKVIEVRNKTNLRECDGIVIPGGESTTLRKC MSYDNDSLYNALKNYIHVKKKPVWGTCAGCILLSEKVEKNKDDNIENEYGNDFSLGGLDI EITRNYYGSQNDSFICSLDIKSQDPIFKKNIRAPCIRAPFIKKISSDKVVTIATFSHESF GKNIIGAVEQDNCMGTIFHPELMPYTCFHDYFLEKVKKHIKDSREA

  • title: conserved cys residue
  • coordinates: C87
No Results
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PBANKA_093180      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India