PBANKA_0933500 | rhomboid protease ROM1

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0933500OTHER0.9999280.0000020.000069
No Results

  • Fasta :-

    >PBANKA_0933500 MSNIHTLAEYRDGYGENLPFNRTPGYYASQSSFIQRSKPIDVVNLIFPNFTWKSFVMVVS IIQIIVFIISLSISPGEFLTPSGSILVTLGANVGSKIKNGEIHRLILPIFLHANIFHTFF NVFFQLRMGFTLEKNYGILKVAILYFVSGIYGNILSSSVTYCTIKVGASTSGMGILGIVA SELILLWHIIRHRERVVFNILFFTLISILYYFTFNGSNIDHIGHLGGLLSGISIGMLYNE KMENKPTWYNNVKIASYACLVLLAIVPTVVLFAVPRAC
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0933500.fa Sequence name : PBANKA_0933500 Sequence length : 278 VALUES OF COMPUTED PARAMETERS Coef20 : 3.065 CoefTot : 0.002 ChDiff : 7 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.335 2.941 0.563 0.925 MesoH : 0.701 1.182 -0.015 0.485 MuHd_075 : 17.348 10.275 4.450 4.864 MuHd_095 : 12.286 12.153 5.098 1.464 MuHd_100 : 15.210 17.759 6.057 3.216 MuHd_105 : 17.913 18.355 5.869 3.696 Hmax_075 : 1.400 5.717 -0.941 3.640 Hmax_095 : -3.150 5.500 -2.093 1.420 Hmax_100 : 2.400 10.900 0.031 2.840 Hmax_105 : 1.487 10.000 -0.311 2.713 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9961 0.0039 DFMC : 0.9957 0.0043
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 278 PBANKA_0933500 MSNIHTLAEYRDGYGENLPFNRTPGYYASQSSFIQRSKPIDVVNLIFPNFTWKSFVMVVSIIQIIVFIISLSISPGEFLT 80 PSGSILVTLGANVGSKIKNGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGILKVAILYFVSGIYGNILSSSVT 160 YCTIKVGASTSGMGILGIVASELILLWHIIRHRERVVFNILFFTLISILYYFTFNGSNIDHIGHLGGLLSGISIGMLYNE 240 KMENKPTWYNNVKIASYACLVLLAIVPTVVLFAVPRAC 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0933500 11 HTLAEYR|DG 0.083 . PBANKA_0933500 22 ENLPFNR|TP 0.086 . PBANKA_0933500 36 QSSFIQR|SK 0.146 . PBANKA_0933500 38 SFIQRSK|PI 0.072 . PBANKA_0933500 53 FPNFTWK|SF 0.091 . PBANKA_0933500 96 GANVGSK|IK 0.071 . PBANKA_0933500 98 NVGSKIK|NG 0.060 . PBANKA_0933500 104 KNGEIHR|LI 0.087 . PBANKA_0933500 127 NVFFQLR|MG 0.087 . PBANKA_0933500 134 MGFTLEK|NY 0.064 . PBANKA_0933500 140 KNYGILK|VA 0.060 . PBANKA_0933500 165 VTYCTIK|VG 0.054 . PBANKA_0933500 191 LLWHIIR|HR 0.092 . PBANKA_0933500 193 WHIIRHR|ER 0.068 . PBANKA_0933500 195 IIRHRER|VV 0.152 . PBANKA_0933500 241 GMLYNEK|ME 0.052 . PBANKA_0933500 245 NEKMENK|PT 0.063 . PBANKA_0933500 253 TWYNNVK|IA 0.075 . PBANKA_0933500 276 VLFAVPR|AC 0.093 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0933500 ATGAGTAACATCCATACATTAGCAGAGTATAGGGATGGGTATGGTGAAAATCTTCCATTC AATAGAACACCAGGGTATTATGCGTCACAGAGTAGTTTTATTCAAAGATCAAAACCTATT GACGTAGTTAACTTGATTTTCCCCAATTTTACATGGAAAAGTTTTGTCATGGTTGTTTCC ATAATACAGATTATCGTTTTTATAATATCTCTTAGTATAAGTCCTGGAGAATTTTTAACT CCTTCTGGCAGCATATTAGTAACACTAGGAGCAAATGTTGGATCAAAAATAAAAAACGGA GAAATACATAGATTAATATTGCCTATATTTTTGCATGCAAATATATTTCACACATTTTTT AATGTGTTTTTTCAATTAAGAATGGGATTTACCCTTGAAAAAAATTATGGAATATTAAAA GTTGCGATTTTATATTTTGTATCGGGGATATATGGAAATATACTATCATCATCTGTTACA TATTGTACAATAAAAGTGGGTGCAAGTACATCAGGTATGGGGATATTAGGAATAGTAGCA TCCGAATTAATTTTGTTATGGCATATTATTAGACACAGGGAAAGAGTAGTATTTAATATT TTATTTTTTACTTTAATTTCCATTTTATATTATTTTACCTTTAATGGATCTAATATAGAT CATATTGGTCATTTAGGAGGTCTTTTATCTGGAATATCTATTGGAATGCTTTATAATGAG AAGATGGAAAACAAGCCAACATGGTATAATAATGTAAAAATTGCTTCTTATGCATGTTTA GTACTGCTAGCTATAGTTCCAACTGTTGTTTTGTTTGCTGTTCCTCGTGCATGCTAA
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  • Fasta :-

    MSNIHTLAEYRDGYGENLPFNRTPGYYASQSSFIQRSKPIDVVNLIFPNFTWKSFVMVVS IIQIIVFIISLSISPGEFLTPSGSILVTLGANVGSKIKNGEIHRLILPIFLHANIFHTFF NVFFQLRMGFTLEKNYGILKVAILYFVSGIYGNILSSSVTYCTIKVGASTSGMGILGIVA SELILLWHIIRHRERVVFNILFFTLISILYYFTFNGSNIDHIGHLGGLLSGISIGMLYNE KMENKPTWYNNVKIASYACLVLLAIVPTVVLFAVPRAC

    No Results
No Results
No Results
IDSitePeptideScoreMethod
PBANKA_093350074 SSLSISPGEF0.995unsp

PBANKA_093350      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India