PBANKA_1117800 | rhomboid protease ROM10

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1117800OTHER0.9999510.0000150.000034
No Results

  • Fasta :-

    >PBANKA_1117800 MRFLMNYQNVPNDEVFDDSDLLLLKYARSFYKTFKKNIQFIQILFPSYKPHYVTIIFSIF LYIFFLGYDIYFFNKYNPLFIREDVLTNIGINREIISNKLHFHKFITATLIHPNIWSLII NTYYLINLGIIAEKNYGKIHIIAIMLFSSICGNLLMCATANCNEAQLGTSTILFGIMGLF LQEVTSNFKRIKGKIEIIGTYLFTIIPMYLTIAMFPHNGNIMGNIGGLFGGYCYPYIFNV IRMNKGPGNISRLVHIGLMGLFLISLILSLLIIKC
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1117800.fa Sequence name : PBANKA_1117800 Sequence length : 275 VALUES OF COMPUTED PARAMETERS Coef20 : 3.191 CoefTot : -0.710 ChDiff : 9 ZoneTo : 12 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.488 2.759 0.523 0.926 MesoH : 0.712 1.030 -0.026 0.486 MuHd_075 : 35.260 20.829 8.593 5.594 MuHd_095 : 39.117 16.654 9.057 6.455 MuHd_100 : 28.269 12.250 6.281 4.902 MuHd_105 : 9.696 5.619 2.676 3.283 Hmax_075 : 8.167 8.283 -0.846 3.290 Hmax_095 : 7.000 7.600 -1.759 3.050 Hmax_100 : 7.000 7.600 -1.759 3.050 Hmax_105 : -9.200 2.917 -3.811 2.357 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9612 0.0388 DFMC : 0.9572 0.0428
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 275 PBANKA_1117800 MRFLMNYQNVPNDEVFDDSDLLLLKYARSFYKTFKKNIQFIQILFPSYKPHYVTIIFSIFLYIFFLGYDIYFFNKYNPLF 80 IREDVLTNIGINREIISNKLHFHKFITATLIHPNIWSLIINTYYLINLGIIAEKNYGKIHIIAIMLFSSICGNLLMCATA 160 NCNEAQLGTSTILFGIMGLFLQEVTSNFKRIKGKIEIIGTYLFTIIPMYLTIAMFPHNGNIMGNIGGLFGGYCYPYIFNV 240 IRMNKGPGNISRLVHIGLMGLFLISLILSLLIIKC 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1117800 2 -----MR|FL 0.125 . PBANKA_1117800 25 SDLLLLK|YA 0.064 . PBANKA_1117800 28 LLLKYAR|SF 0.119 . PBANKA_1117800 32 YARSFYK|TF 0.068 . PBANKA_1117800 35 SFYKTFK|KN 0.069 . PBANKA_1117800 36 FYKTFKK|NI 0.097 . PBANKA_1117800 49 ILFPSYK|PH 0.062 . PBANKA_1117800 75 DIYFFNK|YN 0.060 . PBANKA_1117800 82 YNPLFIR|ED 0.069 . PBANKA_1117800 93 TNIGINR|EI 0.096 . PBANKA_1117800 99 REIISNK|LH 0.070 . PBANKA_1117800 104 NKLHFHK|FI 0.087 . PBANKA_1117800 134 LGIIAEK|NY 0.067 . PBANKA_1117800 138 AEKNYGK|IH 0.068 . PBANKA_1117800 189 EVTSNFK|RI 0.054 . PBANKA_1117800 190 VTSNFKR|IK 0.385 . PBANKA_1117800 192 SNFKRIK|GK 0.087 . PBANKA_1117800 194 FKRIKGK|IE 0.080 . PBANKA_1117800 242 YIFNVIR|MN 0.088 . PBANKA_1117800 245 NVIRMNK|GP 0.126 . PBANKA_1117800 252 GPGNISR|LV 0.225 . PBANKA_1117800 274 LSLLIIK|C- 0.057 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1117800 ATGCGATTTCTCATGAATTATCAAAATGTTCCAAATGACGAGGTATTTGATGACTCCGAT TTGTTACTTTTAAAATATGCACGATCTTTTTATAAAACTTTTAAGAAGAATATTCAATTT ATTCAAATCCTATTCCCTTCTTATAAGCCTCATTATGTTACCATAATCTTTTCCATATTC TTATATATATTTTTTTTGGGATATGACATTTATTTTTTTAATAAATACAACCCTTTATTT ATTAGAGAAGATGTGTTAACAAATATAGGAATAAACAGGGAAATTATTTCAAATAAATTA CATTTCCACAAATTCATAACTGCAACATTAATTCATCCTAATATATGGAGTTTGATAATT AATACATATTACTTAATTAACCTTGGAATAATTGCCGAGAAAAATTATGGAAAAATTCAT ATTATAGCAATAATGTTGTTTAGTTCGATATGTGGGAATTTATTAATGTGTGCAACAGCA AACTGCAATGAAGCCCAATTAGGAACCAGTACTATACTATTTGGAATTATGGGTCTTTTT TTACAAGAAGTAACATCAAACTTTAAAAGGATTAAAGGAAAAATCGAAATCATAGGGACT TATTTATTTACGATCATACCAATGTATTTGACAATAGCCATGTTCCCACATAATGGAAAC ATTATGGGAAATATCGGGGGATTATTCGGAGGTTATTGCTACCCATACATTTTTAATGTG ATTAGAATGAATAAAGGGCCAGGAAATATTTCAAGATTAGTACACATTGGATTAATGGGA TTATTTTTAATTTCGTTAATACTTAGTCTATTAATTATTAAGTGTTAA
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  • Fasta :-

    MRFLMNYQNVPNDEVFDDSDLLLLKYARSFYKTFKKNIQFIQILFPSYKPHYVTIIFSIF LYIFFLGYDIYFFNKYNPLFIREDVLTNIGINREIISNKLHFHKFITATLIHPNIWSLII NTYYLINLGIIAEKNYGKIHIIAIMLFSSICGNLLMCATANCNEAQLGTSTILFGIMGLF LQEVTSNFKRIKGKIEIIGTYLFTIIPMYLTIAMFPHNGNIMGNIGGLFGGYCYPYIFNV IRMNKGPGNISRLVHIGLMGLFLISLILSLLIIKC

    No Results
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PBANKA_111780      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India