PBANKA_1130400 | proteasome subunit alpha type-4, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1130400OTHER0.9995730.0001230.000304
No Results

  • Fasta :-

    >PBANKA_1130400 MARRYDSRTTTFSPEGRLYQVEYALEAINNASITIGIITNGGVILGADKVFISKLINKAN NFEKIYKIDDHIFCGVAGLNADANILINQSRLYAQRYLYNYNDVEPVAQLVVQICDIKQS YTQYGGLRPYGVSFLIAGYDTKEGYQLYHTDPSGNYSGWFATAIGTNNLTASSILKQEWK KDMTLQEGLLLAIKTLAKSTDSEIPKCEKIELAYLANQDGKVIQKYLTEKEIAELIKIYT QQNVKK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1130400.fa Sequence name : PBANKA_1130400 Sequence length : 246 VALUES OF COMPUTED PARAMETERS Coef20 : 4.248 CoefTot : 0.254 ChDiff : 1 ZoneTo : 5 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.547 1.576 0.300 0.665 MesoH : -0.553 0.449 -0.387 0.270 MuHd_075 : 23.056 5.387 3.615 6.134 MuHd_095 : 14.841 4.720 3.134 2.857 MuHd_100 : 18.488 8.050 3.829 4.676 MuHd_105 : 19.679 11.334 4.048 6.197 Hmax_075 : -3.850 -2.975 -3.651 0.210 Hmax_095 : -1.312 -1.050 -2.054 0.411 Hmax_100 : 10.800 3.300 0.402 2.970 Hmax_105 : -1.283 -0.933 -1.926 2.065 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6340 0.3660 DFMC : 0.5880 0.4120
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 246 PBANKA_1130400 MARRYDSRTTTFSPEGRLYQVEYALEAINNASITIGIITNGGVILGADKVFISKLINKANNFEKIYKIDDHIFCGVAGLN 80 ADANILINQSRLYAQRYLYNYNDVEPVAQLVVQICDIKQSYTQYGGLRPYGVSFLIAGYDTKEGYQLYHTDPSGNYSGWF 160 ATAIGTNNLTASSILKQEWKKDMTLQEGLLLAIKTLAKSTDSEIPKCEKIELAYLANQDGKVIQKYLTEKEIAELIKIYT 240 QQNVKK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1130400 3 ----MAR|RY 0.096 . PBANKA_1130400 4 ---MARR|YD 0.146 . PBANKA_1130400 8 ARRYDSR|TT 0.106 . PBANKA_1130400 17 TFSPEGR|LY 0.096 . PBANKA_1130400 49 VILGADK|VF 0.054 . PBANKA_1130400 54 DKVFISK|LI 0.064 . PBANKA_1130400 58 ISKLINK|AN 0.060 . PBANKA_1130400 64 KANNFEK|IY 0.072 . PBANKA_1130400 67 NFEKIYK|ID 0.072 . PBANKA_1130400 91 ILINQSR|LY 0.081 . PBANKA_1130400 96 SRLYAQR|YL 0.107 . PBANKA_1130400 118 VQICDIK|QS 0.063 . PBANKA_1130400 128 TQYGGLR|PY 0.103 . PBANKA_1130400 142 IAGYDTK|EG 0.064 . PBANKA_1130400 176 TASSILK|QE 0.076 . PBANKA_1130400 180 ILKQEWK|KD 0.065 . PBANKA_1130400 181 LKQEWKK|DM 0.141 . PBANKA_1130400 194 GLLLAIK|TL 0.060 . PBANKA_1130400 198 AIKTLAK|ST 0.087 . PBANKA_1130400 206 TDSEIPK|CE 0.074 . PBANKA_1130400 209 EIPKCEK|IE 0.055 . PBANKA_1130400 221 LANQDGK|VI 0.075 . PBANKA_1130400 225 DGKVIQK|YL 0.074 . PBANKA_1130400 230 QKYLTEK|EI 0.065 . PBANKA_1130400 237 EIAELIK|IY 0.067 . PBANKA_1130400 245 YTQQNVK|K- 0.057 . PBANKA_1130400 246 TQQNVKK|-- 0.145 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1130400 ATGGCTAGAAGATATGATAGTAGGACGACAACATTTTCTCCAGAAGGAAGATTATATCAA GTAGAATATGCTCTTGAAGCTATAAATAATGCAAGTATAACAATAGGGATAATAACTAAT GGTGGGGTAATACTAGGTGCTGATAAAGTGTTTATATCAAAGTTAATAAATAAAGCTAAT AATTTTGAAAAAATTTACAAAATTGATGATCATATATTTTGTGGAGTAGCAGGGTTAAAT GCTGATGCAAACATATTAATAAATCAATCACGATTATATGCACAAAGATATTTATATAAT TACAATGATGTTGAGCCAGTAGCACAATTAGTAGTTCAAATATGTGATATTAAACAAAGT TATACCCAATATGGTGGATTAAGACCATATGGTGTTAGCTTTTTAATTGCTGGGTATGAT ACAAAAGAGGGATATCAACTTTATCATACAGATCCTAGTGGAAATTATTCTGGATGGTTT GCTACAGCTATCGGTACAAATAATTTGACAGCTAGTTCCATTCTTAAACAGGAATGGAAA AAAGATATGACCCTGCAAGAAGGTTTATTGCTAGCTATAAAAACGCTAGCTAAGAGCACA GATAGTGAAATCCCAAAATGTGAAAAAATTGAATTAGCATATTTGGCAAATCAAGACGGA AAAGTTATCCAAAAGTATTTAACAGAGAAAGAGATAGCAGAATTAATTAAAATATATACA CAACAAAATGTTAAAAAATAA
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  • Fasta :-

    MARRYDSRTTTFSPEGRLYQVEYALEAINNASITIGIITNGGVILGADKVFISKLINKAN NFEKIYKIDDHIFCGVAGLNADANILINQSRLYAQRYLYNYNDVEPVAQLVVQICDIKQS YTQYGGLRPYGVSFLIAGYDTKEGYQLYHTDPSGNYSGWFATAIGTNNLTASSILKQEWK KDMTLQEGLLLAIKTLAKSTDSEIPKCEKIELAYLANQDGKVIQKYLTEKEIAELIKIYT QQNVKK

  • title: active site
  • coordinates: S32,D48,V50,K64,T166
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_11304007 SRRYDSRTTT0.992unspPBANKA_113040013 STTTFSPEGR0.99unsp

PBANKA_113040      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India