PBANKA_1130500 | proteasome subunit alpha type-7, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1130500OTHER0.9999380.0000260.000035
No Results

  • Fasta :-

    >PBANKA_1130500 MSYDRAITVFSPDGHLLQVEHALEAVKKGGCAVAIKSSNFAVLAVEKKNIPKLQNPRTTE KLVKLDEHTCLAFSGLNADARILVNKTRLECQRYYLNMDQPAPVDYIAKYVARIQQKFTH RGGVRPFGIATLITGFKNNKEICIYQTEPSGIYASWKAQAIGKNAKVVQEFLEKNYQENM EKNECLLLALKAIFEVVELSSKNVELALLTEGELKYIDEQEVNSLVEIIDNERTKKNAQN D
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1130500.fa Sequence name : PBANKA_1130500 Sequence length : 241 VALUES OF COMPUTED PARAMETERS Coef20 : 3.580 CoefTot : -0.045 ChDiff : 1 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.906 1.665 0.127 0.499 MesoH : -1.185 0.051 -0.547 0.106 MuHd_075 : 28.573 14.937 6.543 4.663 MuHd_095 : 12.129 9.750 3.119 2.812 MuHd_100 : 14.109 14.515 5.303 4.707 MuHd_105 : 15.524 17.553 6.307 6.098 Hmax_075 : 12.862 11.025 1.795 4.043 Hmax_095 : 7.000 6.037 0.113 3.526 Hmax_100 : 7.400 12.100 0.248 4.210 Hmax_105 : 3.600 11.600 -0.028 4.480 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9839 0.0161 DFMC : 0.9804 0.0196
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 241 PBANKA_1130500 MSYDRAITVFSPDGHLLQVEHALEAVKKGGCAVAIKSSNFAVLAVEKKNIPKLQNPRTTEKLVKLDEHTCLAFSGLNADA 80 RILVNKTRLECQRYYLNMDQPAPVDYIAKYVARIQQKFTHRGGVRPFGIATLITGFKNNKEICIYQTEPSGIYASWKAQA 160 IGKNAKVVQEFLEKNYQENMEKNECLLLALKAIFEVVELSSKNVELALLTEGELKYIDEQEVNSLVEIIDNERTKKNAQN 240 D 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 . 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1130500 5 --MSYDR|AI 0.082 . PBANKA_1130500 27 HALEAVK|KG 0.060 . PBANKA_1130500 28 ALEAVKK|GG 0.115 . PBANKA_1130500 36 GCAVAIK|SS 0.079 . PBANKA_1130500 47 AVLAVEK|KN 0.062 . PBANKA_1130500 48 VLAVEKK|NI 0.105 . PBANKA_1130500 52 EKKNIPK|LQ 0.060 . PBANKA_1130500 57 PKLQNPR|TT 0.086 . PBANKA_1130500 61 NPRTTEK|LV 0.081 . PBANKA_1130500 64 TTEKLVK|LD 0.063 . PBANKA_1130500 81 GLNADAR|IL 0.104 . PBANKA_1130500 86 ARILVNK|TR 0.063 . PBANKA_1130500 88 ILVNKTR|LE 0.081 . PBANKA_1130500 93 TRLECQR|YY 0.089 . PBANKA_1130500 109 PVDYIAK|YV 0.083 . PBANKA_1130500 113 IAKYVAR|IQ 0.104 . PBANKA_1130500 117 VARIQQK|FT 0.088 . PBANKA_1130500 121 QQKFTHR|GG 0.079 . PBANKA_1130500 125 THRGGVR|PF 0.108 . PBANKA_1130500 137 TLITGFK|NN 0.058 . PBANKA_1130500 140 TGFKNNK|EI 0.070 . PBANKA_1130500 157 GIYASWK|AQ 0.074 . PBANKA_1130500 163 KAQAIGK|NA 0.074 . PBANKA_1130500 166 AIGKNAK|VV 0.077 . PBANKA_1130500 174 VQEFLEK|NY 0.056 . PBANKA_1130500 182 YQENMEK|NE 0.055 . PBANKA_1130500 191 CLLLALK|AI 0.060 . PBANKA_1130500 202 VVELSSK|NV 0.071 . PBANKA_1130500 215 LTEGELK|YI 0.077 . PBANKA_1130500 233 EIIDNER|TK 0.069 . PBANKA_1130500 235 IDNERTK|KN 0.070 . PBANKA_1130500 236 DNERTKK|NA 0.247 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1130500 ATGAGTTATGATAGAGCAATAACAGTGTTTAGTCCGGATGGACATTTATTACAAGTAGAG CATGCTTTAGAAGCAGTAAAAAAAGGGGGTTGTGCAGTGGCTATAAAAAGTTCCAATTTC GCTGTTTTGGCTGTTGAAAAAAAAAATATTCCCAAACTTCAGAATCCAAGAACAACAGAA AAGCTAGTTAAACTTGATGAACACACATGTCTAGCTTTCTCAGGTTTAAATGCGGATGCA CGAATTTTAGTCAATAAGACTCGTTTGGAATGTCAAAGATATTACTTAAATATGGATCAA CCCGCTCCAGTTGATTATATAGCAAAATATGTTGCCAGAATACAACAAAAGTTTACTCAT AGGGGGGGGGTTCGGCCTTTTGGAATTGCAACATTAATAACAGGATTCAAAAATAATAAA GAAATTTGTATATATCAAACTGAGCCTAGTGGAATATATGCATCTTGGAAAGCTCAAGCA ATAGGAAAAAATGCTAAAGTTGTTCAGGAATTTTTAGAAAAAAATTATCAAGAAAATATG GAAAAAAATGAATGTCTTCTTTTGGCTTTGAAAGCTATATTTGAAGTCGTTGAATTAAGC AGTAAAAATGTTGAACTTGCTCTCCTCACAGAAGGAGAGTTAAAATATATTGACGAGCAG GAAGTTAATTCATTGGTTGAAATAATTGATAATGAGAGGACAAAAAAAAATGCCCAAAAT GATTAA
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  • Fasta :-

    MSYDRAITVFSPDGHLLQVEHALEAVKKGGCAVAIKSSNFAVLAVEKKNIPKLQNPRTTE KLVKLDEHTCLAFSGLNADARILVNKTRLECQRYYLNMDQPAPVDYIAKYVARIQQKFTH RGGVRPFGIATLITGFKNNKEICIYQTEPSGIYASWKAQAIGKNAKVVQEFLEKNYQENM EKNECLLLALKAIFEVVELSSKNVELALLTEGELKYIDEQEVNSLVEIIDNERTKKNAQN D

  • title: active site
  • coordinates: G30,E46,K48,K61,K163
No Results
No Results
IDSitePeptideScoreMethod
PBANKA_113050059 TNPRTTEKLV0.992unsp

PBANKA_113050      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India