PBANKA_1209800 | proteasome subunit beta type-5, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1209800OTHER0.9998810.0000660.000053
No Results

  • Fasta :-

    >PBANKA_1209800 MMQYSTDFMSQIDNLINDEEENVNTTDELEFCIAPISVPRNFIKYAKTENKKLFDFHKGT TTLAFKFKEGIIVAVDSRASMGSFISSQNVEKIIEINKYILGTMAGGAADCFYWEKYLGQ IIKIYELRNNEKISVRAASTILSNILYQYKGYGLCCGIILSGYDHTGFNMFYIDDEGKKV EGNLFSCGSGSTYAYSILDSAYDYNLSVDQAVELGRNAIYHATFRDGGSGGKVRVFYIHK NGYSKIIEGEDVYDLHYHYTNPSQKDQYVM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1209800.fa Sequence name : PBANKA_1209800 Sequence length : 270 VALUES OF COMPUTED PARAMETERS Coef20 : 3.312 CoefTot : -0.200 ChDiff : -8 ZoneTo : 6 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.965 1.071 0.164 0.470 MesoH : -0.459 0.292 -0.287 0.231 MuHd_075 : 27.483 13.160 6.904 2.934 MuHd_095 : 35.352 26.282 10.069 7.852 MuHd_100 : 42.413 30.712 11.684 8.704 MuHd_105 : 39.482 29.054 10.924 7.855 Hmax_075 : 7.000 3.200 -1.553 2.110 Hmax_095 : 16.600 15.400 2.623 5.820 Hmax_100 : 20.700 18.600 3.145 6.200 Hmax_105 : 20.400 18.600 3.171 6.200 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7335 0.2665 DFMC : 0.8098 0.1902
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 270 PBANKA_1209800 MMQYSTDFMSQIDNLINDEEENVNTTDELEFCIAPISVPRNFIKYAKTENKKLFDFHKGTTTLAFKFKEGIIVAVDSRAS 80 MGSFISSQNVEKIIEINKYILGTMAGGAADCFYWEKYLGQIIKIYELRNNEKISVRAASTILSNILYQYKGYGLCCGIIL 160 SGYDHTGFNMFYIDDEGKKVEGNLFSCGSGSTYAYSILDSAYDYNLSVDQAVELGRNAIYHATFRDGGSGGKVRVFYIHK 240 NGYSKIIEGEDVYDLHYHYTNPSQKDQYVM 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1209800 40 APISVPR|NF 0.105 . PBANKA_1209800 44 VPRNFIK|YA 0.095 . PBANKA_1209800 47 NFIKYAK|TE 0.068 . PBANKA_1209800 51 YAKTENK|KL 0.069 . PBANKA_1209800 52 AKTENKK|LF 0.084 . PBANKA_1209800 58 KLFDFHK|GT 0.075 . PBANKA_1209800 66 TTTLAFK|FK 0.073 . PBANKA_1209800 68 TLAFKFK|EG 0.078 . PBANKA_1209800 78 IVAVDSR|AS 0.100 . PBANKA_1209800 92 SSQNVEK|II 0.076 . PBANKA_1209800 98 KIIEINK|YI 0.062 . PBANKA_1209800 116 DCFYWEK|YL 0.089 . PBANKA_1209800 123 YLGQIIK|IY 0.062 . PBANKA_1209800 128 IKIYELR|NN 0.090 . PBANKA_1209800 132 ELRNNEK|IS 0.063 . PBANKA_1209800 136 NEKISVR|AA 0.145 . PBANKA_1209800 150 NILYQYK|GY 0.066 . PBANKA_1209800 178 YIDDEGK|KV 0.078 . PBANKA_1209800 179 IDDEGKK|VE 0.080 . PBANKA_1209800 216 QAVELGR|NA 0.084 . PBANKA_1209800 225 IYHATFR|DG 0.149 . PBANKA_1209800 232 DGGSGGK|VR 0.050 . PBANKA_1209800 234 GSGGKVR|VF 0.097 . PBANKA_1209800 240 RVFYIHK|NG 0.057 . PBANKA_1209800 245 HKNGYSK|II 0.073 . PBANKA_1209800 265 YTNPSQK|DQ 0.075 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1209800 ATGATGCAATACAGTACTGACTTTATGAGCCAGATTGATAATTTGATAAACGATGAGGAA GAAAATGTCAATACTACTGATGAACTTGAATTTTGTATAGCCCCAATAAGCGTTCCAAGA AATTTCATAAAATATGCAAAAACAGAAAATAAAAAATTGTTTGATTTTCATAAGGGTACT ACAACATTAGCATTTAAATTTAAGGAAGGTATTATTGTCGCAGTGGATTCAAGAGCTTCC ATGGGTTCTTTTATATCTTCTCAAAATGTAGAAAAAATTATTGAAATAAATAAATACATA TTAGGAACAATGGCAGGTGGAGCAGCTGATTGTTTTTATTGGGAAAAATATTTAGGTCAA ATAATTAAAATATATGAATTAAGAAATAATGAAAAAATATCAGTTAGAGCAGCTAGTACA ATATTAAGTAATATTTTATATCAATACAAAGGATATGGTTTATGCTGTGGAATAATATTA AGTGGTTATGACCATACTGGATTTAATATGTTTTATATTGATGATGAAGGTAAAAAAGTT GAGGGGAATTTATTTAGTTGTGGTAGTGGTAGTACATATGCTTATTCTATTTTGGATTCC GCCTATGATTATAATTTATCAGTTGACCAAGCAGTTGAGCTTGGTAGAAATGCAATTTAT CATGCTACGTTTAGAGATGGAGGTTCGGGTGGAAAAGTAAGAGTTTTTTATATACATAAA AATGGATATAGCAAAATTATTGAAGGTGAAGACGTATATGATTTACACTATCACTATACA AACCCATCACAAAAGGATCAATATGTTATGTAA
  • Download Fasta

  • Fasta :-

    MMQYSTDFMSQIDNLINDEEENVNTTDELEFCIAPISVPRNFIKYAKTENKKLFDFHKGT TTLAFKFKEGIIVAVDSRASMGSFISSQNVEKIIEINKYILGTMAGGAADCFYWEKYLGQ IIKIYELRNNEKISVRAASTILSNILYQYKGYGLCCGIILSGYDHTGFNMFYIDDEGKKV EGNLFSCGSGSTYAYSILDSAYDYNLSVDQAVELGRNAIYHATFRDGGSGGKVRVFYIHK NGYSKIIEGEDVYDLHYHYTNPSQKDQYVM

  • title: active site
  • coordinates: T60,D76,R78,K92,S189,D226,S229,G230
No Results
No Results
IDSitePeptideScoreMethod
PBANKA_1209800263 SYTNPSQKDQ0.996unsp

PBANKA_120980      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India