PBANKA_1222900 | 26S proteasome regulatory subunit RPN10, putative

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  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
PBANKA_1222900OTHER0.9999860.0000130.000000
No Results

  • Fasta :-

    >PBANKA_1222900 MSNIEATIICIDNSDYNMNEDIVPNRFMSQIDCVNILCCNKTSMHYKNSIGVLVMAGDGI KVKVSLTNDIGQLLSCIHDIKIDGSCDLIRSLLIAQLALKHRVDKNLEQKIIIFIGSPIE VNEKQLINTGKQLKKNNISIDIISYGNINKNRDKLNKLFESTNNNGNCRIIECPENEENL SKYVLNKILNNNNFNMNNLDEDAQLLTAMELSMGASNNTTGVPNTLSNNNTQSDNNNINS RKNLNDLPTIQDIENMKDIDNELKEALLLSLREYNEKNKTDPENQNENNKINSELKNEGN GENLTIVNEEYKNIFDNEKTDLQTKQIGEKKENESYEKVFKICKDENIEDDNNKFQINPN IYINTENNTQNINKETNDDKNEFSIQDTNYISQILEKIPGNSTNLLGKKSDTEKESDNND GK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1222900.fa Sequence name : PBANKA_1222900 Sequence length : 422 VALUES OF COMPUTED PARAMETERS Coef20 : 3.592 CoefTot : -0.022 ChDiff : -21 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.435 1.400 -0.084 0.472 MesoH : -0.619 0.568 -0.290 0.209 MuHd_075 : 7.444 10.524 4.566 2.063 MuHd_095 : 12.051 7.499 3.572 2.391 MuHd_100 : 15.776 12.616 4.233 3.498 MuHd_105 : 19.352 14.145 4.681 3.721 Hmax_075 : 9.917 12.950 1.544 4.527 Hmax_095 : 6.738 7.700 0.762 3.460 Hmax_100 : 8.600 13.100 1.694 4.530 Hmax_105 : 17.900 15.800 2.983 5.250 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9908 0.0092 DFMC : 0.9896 0.0104
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 422 PBANKA_1222900 MSNIEATIICIDNSDYNMNEDIVPNRFMSQIDCVNILCCNKTSMHYKNSIGVLVMAGDGIKVKVSLTNDIGQLLSCIHDI 80 KIDGSCDLIRSLLIAQLALKHRVDKNLEQKIIIFIGSPIEVNEKQLINTGKQLKKNNISIDIISYGNINKNRDKLNKLFE 160 STNNNGNCRIIECPENEENLSKYVLNKILNNNNFNMNNLDEDAQLLTAMELSMGASNNTTGVPNTLSNNNTQSDNNNINS 240 RKNLNDLPTIQDIENMKDIDNELKEALLLSLREYNEKNKTDPENQNENNKINSELKNEGNGENLTIVNEEYKNIFDNEKT 320 DLQTKQIGEKKENESYEKVFKICKDENIEDDNNKFQINPNIYINTENNTQNINKETNDDKNEFSIQDTNYISQILEKIPG 400 NSTNLLGKKSDTEKESDNNDGK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ...................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1222900 26 EDIVPNR|FM 0.119 . PBANKA_1222900 41 NILCCNK|TS 0.055 . PBANKA_1222900 47 KTSMHYK|NS 0.104 . PBANKA_1222900 61 MAGDGIK|VK 0.054 . PBANKA_1222900 63 GDGIKVK|VS 0.062 . PBANKA_1222900 81 SCIHDIK|ID 0.063 . PBANKA_1222900 90 GSCDLIR|SL 0.143 . PBANKA_1222900 100 IAQLALK|HR 0.057 . PBANKA_1222900 102 QLALKHR|VD 0.085 . PBANKA_1222900 105 LKHRVDK|NL 0.267 . PBANKA_1222900 110 DKNLEQK|II 0.069 . PBANKA_1222900 124 PIEVNEK|QL 0.064 . PBANKA_1222900 131 QLINTGK|QL 0.075 . PBANKA_1222900 134 NTGKQLK|KN 0.065 . PBANKA_1222900 135 TGKQLKK|NN 0.094 . PBANKA_1222900 150 SYGNINK|NR 0.059 . PBANKA_1222900 152 GNINKNR|DK 0.144 . PBANKA_1222900 154 INKNRDK|LN 0.063 . PBANKA_1222900 157 NRDKLNK|LF 0.068 . PBANKA_1222900 169 NNNGNCR|II 0.122 . PBANKA_1222900 182 NEENLSK|YV 0.076 . PBANKA_1222900 187 SKYVLNK|IL 0.072 . PBANKA_1222900 241 NNNINSR|KN 0.096 . PBANKA_1222900 242 NNINSRK|NL 0.090 . PBANKA_1222900 257 QDIENMK|DI 0.087 . PBANKA_1222900 264 DIDNELK|EA 0.053 . PBANKA_1222900 272 ALLLSLR|EY 0.069 . PBANKA_1222900 277 LREYNEK|NK 0.071 . PBANKA_1222900 279 EYNEKNK|TD 0.060 . PBANKA_1222900 290 NQNENNK|IN 0.066 . PBANKA_1222900 296 KINSELK|NE 0.076 . PBANKA_1222900 312 IVNEEYK|NI 0.080 . PBANKA_1222900 319 NIFDNEK|TD 0.054 . PBANKA_1222900 325 KTDLQTK|QI 0.073 . PBANKA_1222900 330 TKQIGEK|KE 0.060 . PBANKA_1222900 331 KQIGEKK|EN 0.121 . PBANKA_1222900 338 ENESYEK|VF 0.055 . PBANKA_1222900 341 SYEKVFK|IC 0.061 . PBANKA_1222900 344 KVFKICK|DE 0.062 . PBANKA_1222900 354 IEDDNNK|FQ 0.058 . PBANKA_1222900 374 NTQNINK|ET 0.069 . PBANKA_1222900 380 KETNDDK|NE 0.063 . PBANKA_1222900 397 ISQILEK|IP 0.069 . PBANKA_1222900 408 STNLLGK|KS 0.070 . PBANKA_1222900 409 TNLLGKK|SD 0.155 . PBANKA_1222900 414 KKSDTEK|ES 0.072 . PBANKA_1222900 422 SDNNDGK|-- 0.071 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1222900 ATGAGTAATATCGAAGCTACAATTATTTGCATAGATAACAGCGATTATAATATGAACGAA GATATCGTTCCAAATCGGTTTATGTCCCAGATTGACTGTGTAAATATACTATGTTGTAAC AAAACAAGTATGCATTATAAAAATAGTATAGGAGTGTTAGTTATGGCAGGGGATGGAATA AAAGTAAAAGTATCATTAACAAATGATATTGGGCAACTATTATCTTGTATTCATGATATA AAAATAGATGGATCATGTGATTTAATCAGAAGTTTGCTTATTGCACAATTAGCATTAAAA CATAGAGTTGATAAAAATTTAGAACAAAAAATAATTATATTTATTGGAAGCCCTATAGAA GTTAATGAAAAACAATTAATAAATACTGGGAAACAATTAAAAAAAAATAACATATCGATT GATATAATTAGTTATGGAAATATAAATAAAAATAGGGATAAATTAAATAAATTATTTGAA TCCACAAATAATAATGGAAATTGTAGAATTATTGAATGCCCAGAAAATGAAGAAAATTTA AGCAAATATGTTTTGAATAAAATTTTAAACAATAATAACTTTAATATGAACAATTTAGAT GAAGATGCACAATTATTAACAGCAATGGAATTGTCTATGGGTGCATCTAATAATACAACA GGTGTTCCAAATACACTTTCAAATAATAATACACAATCTGATAATAATAATATAAATTCA AGAAAAAACCTTAATGATTTACCAACTATTCAAGATATTGAAAATATGAAAGACATTGAT AACGAACTAAAGGAAGCCTTACTATTGTCCTTAAGAGAATACAATGAAAAAAATAAAACA GATCCTGAAAATCAAAATGAAAATAATAAAATAAATTCAGAATTAAAAAATGAAGGAAAT GGAGAAAATCTTACAATAGTTAATGAAGAATATAAAAATATTTTTGATAATGAAAAAACC GATTTACAAACAAAACAAATTGGAGAAAAAAAAGAAAACGAAAGTTATGAAAAAGTTTTT AAAATATGTAAAGATGAAAATATAGAAGATGATAATAATAAATTTCAAATAAATCCAAAT ATTTATATTAATACAGAAAATAATACTCAAAATATAAATAAAGAAACAAATGACGATAAA AATGAATTTTCTATTCAAGATACAAATTATATATCCCAAATCTTAGAAAAAATACCAGGA AATTCGACTAATTTACTTGGAAAAAAATCAGATACCGAAAAAGAAAGTGACAATAATGAT GGTAAGTAA
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  • Fasta :-

    MSNIEATIICIDNSDYNMNEDIVPNRFMSQIDCVNILCCNKTSMHYKNSIGVLVMAGDGI KVKVSLTNDIGQLLSCIHDIKIDGSCDLIRSLLIAQLALKHRVDKNLEQKIIIFIGSPIE VNEKQLINTGKQLKKNNISIDIISYGNINKNRDKLNKLFESTNNNGNCRIIECPENEENL SKYVLNKILNNNNFNMNNLDEDAQLLTAMELSMGASNNTTGVPNTLSNNNTQSDNNNINS RKNLNDLPTIQDIENMKDIDNELKEALLLSLREYNEKNKTDPENQNENNKINSELKNEGN GENLTIVNEEYKNIFDNEKTDLQTKQIGEKKENESYEKVFKICKDENIEDDNNKFQINPN IYINTENNTQNINKETNDDKNEFSIQDTNYISQILEKIPGNSTNLLGKKSDTEKESDNND GK

  • title: metal ion-dependent adhesion site (MIDAS)
  • coordinates: D12,C86,G116
No Results
No Results
IDSitePeptideScoreMethod
PBANKA_122290029 SNRFMSQIDC0.994unsp

PBANKA_122290      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India