PBANKA_1223100 | proteasome subunit alpha type-6, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1223100OTHER0.9994850.0002740.000242
No Results

  • Fasta :-

    >PBANKA_1223100 MVRQSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSLGVKGENCAVIISQKKMATQY ITQDKLLDYNNITNIYNISDEIGCSMVGMPGDCLSMVYKARSEASEYLYNNGYNLNVETL CRNICDKIQVFTQHAYMRLHACSGILIGMNEDNKPELYKFDPAGFCAGYRACVIGNKEQE SISILERLLEKRKKKIQQETLEEDIQNTIILAIEALQAILAFDLKANEIEMAIVSKKNPN FIQISEKEIDNYLTFIAERD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1223100.fa Sequence name : PBANKA_1223100 Sequence length : 260 VALUES OF COMPUTED PARAMETERS Coef20 : 3.774 CoefTot : -0.108 ChDiff : -6 ZoneTo : 9 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.141 1.882 0.245 0.655 MesoH : -0.829 0.070 -0.388 0.132 MuHd_075 : 3.995 3.733 1.471 0.924 MuHd_095 : 33.034 14.749 5.718 7.001 MuHd_100 : 31.622 17.345 5.763 7.429 MuHd_105 : 25.289 15.162 4.748 6.403 Hmax_075 : 2.800 0.600 -2.081 1.423 Hmax_095 : 9.450 5.775 -0.465 3.098 Hmax_100 : 10.500 7.400 -0.667 3.720 Hmax_105 : 9.700 8.100 -0.439 4.020 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9628 0.0372 DFMC : 0.9837 0.0163
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 260 PBANKA_1223100 MVRQSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSLGVKGENCAVIISQKKMATQYITQDKLLDYNNITNIYNISD 80 EIGCSMVGMPGDCLSMVYKARSEASEYLYNNGYNLNVETLCRNICDKIQVFTQHAYMRLHACSGILIGMNEDNKPELYKF 160 DPAGFCAGYRACVIGNKEQESISILERLLEKRKKKIQQETLEEDIQNTIILAIEALQAILAFDLKANEIEMAIVSKKNPN 240 FIQISEKEIDNYLTFIAERD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1223100 3 ----MVR|QS 0.084 . PBANKA_1223100 11 SQSMYDR|HL 0.107 . PBANKA_1223100 30 QIEYAIK|AV 0.070 . PBANKA_1223100 33 YAIKAVK|NT 0.059 . PBANKA_1223100 43 ITSLGVK|GE 0.063 . PBANKA_1223100 54 AVIISQK|KM 0.060 . PBANKA_1223100 55 VIISQKK|MA 0.135 . PBANKA_1223100 65 QYITQDK|LL 0.064 . PBANKA_1223100 99 CLSMVYK|AR 0.081 . PBANKA_1223100 101 SMVYKAR|SE 0.126 . PBANKA_1223100 122 NVETLCR|NI 0.096 . PBANKA_1223100 127 CRNICDK|IQ 0.066 . PBANKA_1223100 138 TQHAYMR|LH 0.097 . PBANKA_1223100 154 GMNEDNK|PE 0.056 . PBANKA_1223100 159 NKPELYK|FD 0.072 . PBANKA_1223100 170 GFCAGYR|AC 0.083 . PBANKA_1223100 177 ACVIGNK|EQ 0.056 . PBANKA_1223100 187 SISILER|LL 0.096 . PBANKA_1223100 191 LERLLEK|RK 0.060 . PBANKA_1223100 192 ERLLEKR|KK 0.188 . PBANKA_1223100 193 RLLEKRK|KK 0.093 . PBANKA_1223100 194 LLEKRKK|KI 0.122 . PBANKA_1223100 195 LEKRKKK|IQ 0.283 . PBANKA_1223100 225 ILAFDLK|AN 0.068 . PBANKA_1223100 236 EMAIVSK|KN 0.062 . PBANKA_1223100 237 MAIVSKK|NP 0.105 . PBANKA_1223100 247 FIQISEK|EI 0.078 . PBANKA_1223100 259 LTFIAER|D- 0.096 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1223100 ATGGTACGACAATCACAGAGTATGTATGATAGGCATTTAACCATCTTTTCTCCCGATGGA AACCTTTATCAAATAGAATATGCTATAAAGGCAGTTAAAAATACCAATATAACATCCTTA GGTGTAAAGGGAGAAAATTGTGCTGTCATCATTTCTCAAAAAAAAATGGCAACGCAATAT ATAACTCAAGATAAGTTATTAGATTATAATAACATAACAAATATTTATAACATATCTGAT GAAATCGGATGTTCTATGGTCGGTATGCCTGGGGACTGTCTTAGCATGGTTTATAAAGCC AGATCTGAGGCTTCCGAATATTTATATAATAATGGATATAATTTAAACGTTGAAACATTA TGTAGAAATATTTGCGATAAAATTCAAGTATTTACTCAACATGCTTATATGAGATTACAC GCTTGCAGTGGAATACTTATTGGAATGAATGAAGACAACAAACCTGAACTTTATAAATTT GACCCAGCAGGTTTTTGTGCTGGATATAGAGCATGTGTTATTGGAAATAAAGAACAAGAA AGCATAAGTATTTTAGAAAGGCTATTGGAAAAGAGAAAAAAGAAAATACAACAAGAAACA TTAGAAGAAGACATACAAAATACTATTATACTAGCCATTGAAGCATTGCAGGCAATTCTT GCTTTTGATTTAAAAGCTAATGAAATAGAAATGGCAATAGTGTCAAAAAAAAATCCCAAT TTCATACAAATAAGTGAAAAAGAAATAGACAATTATTTAACTTTTATTGCGGAAAGAGAT TAA
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  • Fasta :-

    MVRQSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSLGVKGENCAVIISQKKMATQY ITQDKLLDYNNITNIYNISDEIGCSMVGMPGDCLSMVYKARSEASEYLYNNGYNLNVETL CRNICDKIQVFTQHAYMRLHACSGILIGMNEDNKPELYKFDPAGFCAGYRACVIGNKEQE SISILERLLEKRKKKIQQETLEEDIQNTIILAIEALQAILAFDLKANEIEMAIVSKKNPN FIQISEKEIDNYLTFIAERD

  • title: active site
  • coordinates: I37,Q53,K55,N74,N176
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PBANKA_122310      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India