PBANKA_1226500 | proteasome subunit beta type-4, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1226500OTHER0.9853960.0030910.011513
No Results

  • Fasta :-

    >PBANKA_1226500 MTLGPVVTGTSVIALKYRNGVMIAADKKASYGSYAKFQNVQRIFKISNKTVMSFSGELAD AQYLHELLTRVNVNDVVEKKSKYDLHDTKFYHSYVSRLFYNRKNKIDPLFNNIIIAGLNS QEYDDNDKDILLYSEKQNNEEYKDIDKKDLYIGFVDMHGTQFCEDYITTGYARYFALTLL RNHYKDNMTEHEARSLLNECLKILYFRDTTASNKIQIVKITSKGVEYEEPYILNCDLNSR DYIYPSTMLPATGCMW
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1226500.fa Sequence name : PBANKA_1226500 Sequence length : 256 VALUES OF COMPUTED PARAMETERS Coef20 : 3.936 CoefTot : -1.711 ChDiff : -1 ZoneTo : 56 KR : 8 DE : 1 CleavSite : 52 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.059 1.053 0.053 0.451 MesoH : -0.985 0.029 -0.522 0.091 MuHd_075 : 29.915 15.761 8.244 6.411 MuHd_095 : 36.714 24.082 10.832 8.559 MuHd_100 : 43.406 28.375 12.748 10.262 MuHd_105 : 45.919 27.899 13.072 10.389 Hmax_075 : 5.100 5.300 -0.561 3.140 Hmax_095 : 10.588 11.725 0.911 4.252 Hmax_100 : 20.000 20.500 3.575 7.020 Hmax_105 : 18.600 17.325 3.056 6.099 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2028 0.7972 DFMC : 0.1450 0.8550 This protein is probably imported in mitochondria. f(Ser) = 0.1071 f(Arg) = 0.0357 CMi = 0.89286 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 256 PBANKA_1226500 MTLGPVVTGTSVIALKYRNGVMIAADKKASYGSYAKFQNVQRIFKISNKTVMSFSGELADAQYLHELLTRVNVNDVVEKK 80 SKYDLHDTKFYHSYVSRLFYNRKNKIDPLFNNIIIAGLNSQEYDDNDKDILLYSEKQNNEEYKDIDKKDLYIGFVDMHGT 160 QFCEDYITTGYARYFALTLLRNHYKDNMTEHEARSLLNECLKILYFRDTTASNKIQIVKITSKGVEYEEPYILNCDLNSR 240 DYIYPSTMLPATGCMW 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1226500 16 TSVIALK|YR 0.069 . PBANKA_1226500 18 VIALKYR|NG 0.082 . PBANKA_1226500 27 VMIAADK|KA 0.063 . PBANKA_1226500 28 MIAADKK|AS 0.106 . PBANKA_1226500 36 SYGSYAK|FQ 0.064 . PBANKA_1226500 42 KFQNVQR|IF 0.098 . PBANKA_1226500 45 NVQRIFK|IS 0.123 . PBANKA_1226500 49 IFKISNK|TV 0.067 . PBANKA_1226500 70 LHELLTR|VN 0.068 . PBANKA_1226500 79 VNDVVEK|KS 0.062 . PBANKA_1226500 80 NDVVEKK|SK 0.163 . PBANKA_1226500 82 VVEKKSK|YD 0.061 . PBANKA_1226500 89 YDLHDTK|FY 0.066 . PBANKA_1226500 97 YHSYVSR|LF 0.086 . PBANKA_1226500 102 SRLFYNR|KN 0.073 . PBANKA_1226500 103 RLFYNRK|NK 0.081 . PBANKA_1226500 105 FYNRKNK|ID 0.101 . PBANKA_1226500 128 EYDDNDK|DI 0.055 . PBANKA_1226500 136 ILLYSEK|QN 0.063 . PBANKA_1226500 143 QNNEEYK|DI 0.122 . PBANKA_1226500 147 EYKDIDK|KD 0.053 . PBANKA_1226500 148 YKDIDKK|DL 0.162 . PBANKA_1226500 173 ITTGYAR|YF 0.074 . PBANKA_1226500 181 FALTLLR|NH 0.072 . PBANKA_1226500 185 LLRNHYK|DN 0.090 . PBANKA_1226500 194 MTEHEAR|SL 0.119 . PBANKA_1226500 202 LLNECLK|IL 0.064 . PBANKA_1226500 207 LKILYFR|DT 0.134 . PBANKA_1226500 214 DTTASNK|IQ 0.059 . PBANKA_1226500 219 NKIQIVK|IT 0.081 . PBANKA_1226500 223 IVKITSK|GV 0.098 . PBANKA_1226500 240 NCDLNSR|DY 0.075 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1226500 ATGACATTAGGGCCAGTAGTTACCGGAACATCAGTAATAGCTCTGAAATACAGAAATGGA GTAATGATTGCAGCTGATAAAAAAGCTAGCTATGGAAGCTATGCAAAATTTCAAAATGTA CAAAGGATTTTCAAGATAAGCAATAAAACAGTAATGAGCTTTAGTGGGGAGTTAGCCGAT GCTCAATATTTACATGAATTATTAACACGAGTTAATGTAAATGATGTAGTAGAAAAAAAA AGTAAATATGATTTACATGATACGAAATTTTATCATTCATATGTAAGTAGACTATTTTAT AATAGAAAAAATAAAATTGATCCTTTATTTAACAATATAATAATAGCTGGTTTAAATTCA CAAGAATATGATGATAATGATAAAGATATATTATTATATTCAGAAAAACAAAATAATGAA GAATATAAAGACATTGATAAAAAGGATTTATATATCGGATTTGTCGATATGCATGGTACT CAATTTTGTGAGGATTATATAACAACGGGTTATGCTCGATATTTTGCTCTAACATTATTA CGAAATCATTATAAAGATAATATGACTGAGCATGAAGCTCGCTCACTATTAAATGAATGT TTAAAAATATTATATTTTAGAGATACAACAGCTTCAAATAAAATACAAATAGTTAAGATA ACTAGTAAAGGGGTTGAATATGAAGAACCATATATACTTAATTGTGATTTAAATTCTCGG GATTACATTTATCCTTCTACAATGCTTCCCGCAACTGGTTGTATGTGGTAG
  • Download Fasta

  • Fasta :-

    MTLGPVVTGTSVIALKYRNGVMIAADKKASYGSYAKFQNVQRIFKISNKTVMSFSGELAD AQYLHELLTRVNVNDVVEKKSKYDLHDTKFYHSYVSRLFYNRKNKIDPLFNNIIIAGLNS QEYDDNDKDILLYSEKQNNEEYKDIDKKDLYIGFVDMHGTQFCEDYITTGYARYFALTLL RNHYKDNMTEHEARSLLNECLKILYFRDTTASNKIQIVKITSKGVEYEEPYILNCDLNSR DYIYPSTMLPATGCMW

  • title: active site
  • coordinates: T10,D26,K28,R42,Y171,D208,A211,S212
No Results
No Results
IDSitePeptideScoreMethod
PBANKA_122650081 SVEKKSKYDL0.994unsp

PBANKA_122650      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India