PBANKA_1233100 | proteasome subunit beta type-1, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1233100OTHER0.9999320.0000420.000025
No Results

  • Fasta :-

    >PBANKA_1233100 MEILQLNSNIVEKKKTEENEAAIEHARPSKRWNPYIDNGGTVIGLTGNNYVILAGDTRLS LSYSIYTRNCPKISKITDKCIIGSSGMQSDIKTLHSLLQKKIQLFYLEHSHYPSIHVIAK LLCVTLYSRRFFPYYTFNILAGIDENGKGVLYSYDAIGSYYQSTHACTGSGSSLILPILD NRVEQKNQLIKNMDFNLRDDINFVKDAMTSATERDIYTGDKAEIYIIDNLGINTTLLDLK QD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1233100.fa Sequence name : PBANKA_1233100 Sequence length : 242 VALUES OF COMPUTED PARAMETERS Coef20 : 3.166 CoefTot : 0.000 ChDiff : -1 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.282 1.147 0.172 0.519 MesoH : -0.161 0.309 -0.235 0.259 MuHd_075 : 22.457 12.879 5.712 3.491 MuHd_095 : 18.780 13.026 5.694 3.068 MuHd_100 : 9.396 12.208 3.047 2.901 MuHd_105 : 11.739 14.375 4.483 3.708 Hmax_075 : -1.167 8.167 -2.752 2.205 Hmax_095 : -6.400 2.275 -4.160 1.085 Hmax_100 : -10.200 6.100 -4.140 1.980 Hmax_105 : -7.933 6.100 -3.449 1.980 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9383 0.0617 DFMC : 0.9399 0.0601
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 242 PBANKA_1233100 MEILQLNSNIVEKKKTEENEAAIEHARPSKRWNPYIDNGGTVIGLTGNNYVILAGDTRLSLSYSIYTRNCPKISKITDKC 80 IIGSSGMQSDIKTLHSLLQKKIQLFYLEHSHYPSIHVIAKLLCVTLYSRRFFPYYTFNILAGIDENGKGVLYSYDAIGSY 160 YQSTHACTGSGSSLILPILDNRVEQKNQLIKNMDFNLRDDINFVKDAMTSATERDIYTGDKAEIYIIDNLGINTTLLDLK 240 QD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1233100 13 NSNIVEK|KK 0.070 . PBANKA_1233100 14 SNIVEKK|KT 0.162 . PBANKA_1233100 15 NIVEKKK|TE 0.094 . PBANKA_1233100 27 AAIEHAR|PS 0.092 . PBANKA_1233100 30 EHARPSK|RW 0.139 . PBANKA_1233100 31 HARPSKR|WN 0.220 . PBANKA_1233100 58 ILAGDTR|LS 0.066 . PBANKA_1233100 68 SYSIYTR|NC 0.086 . PBANKA_1233100 72 YTRNCPK|IS 0.061 . PBANKA_1233100 75 NCPKISK|IT 0.065 . PBANKA_1233100 79 ISKITDK|CI 0.081 . PBANKA_1233100 92 GMQSDIK|TL 0.064 . PBANKA_1233100 100 LHSLLQK|KI 0.061 . PBANKA_1233100 101 HSLLQKK|IQ 0.090 . PBANKA_1233100 120 SIHVIAK|LL 0.076 . PBANKA_1233100 129 CVTLYSR|RF 0.062 . PBANKA_1233100 130 VTLYSRR|FF 0.106 . PBANKA_1233100 148 GIDENGK|GV 0.065 . PBANKA_1233100 182 LPILDNR|VE 0.071 . PBANKA_1233100 186 DNRVEQK|NQ 0.066 . PBANKA_1233100 191 QKNQLIK|NM 0.068 . PBANKA_1233100 198 NMDFNLR|DD 0.085 . PBANKA_1233100 205 DDINFVK|DA 0.081 . PBANKA_1233100 214 MTSATER|DI 0.180 . PBANKA_1233100 221 DIYTGDK|AE 0.061 . PBANKA_1233100 240 TTLLDLK|QD 0.060 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1233100 ATGGAAATTTTACAATTAAATAGTAATATAGTTGAAAAAAAAAAAACAGAAGAAAATGAA GCCGCAATAGAGCATGCCCGACCTTCTAAAAGATGGAATCCATACATTGACAATGGGGGA ACTGTTATTGGGTTAACAGGAAACAATTATGTAATTTTGGCTGGAGATACACGCTTATCA TTGTCTTATTCAATATACACAAGAAATTGTCCCAAAATATCAAAAATAACTGATAAGTGT ATTATTGGATCATCTGGAATGCAATCAGACATAAAAACCCTTCATTCATTATTACAGAAA AAAATTCAATTATTTTATTTAGAACATTCACATTATCCTAGTATTCATGTAATTGCAAAA TTATTATGTGTAACATTATATAGTCGACGATTTTTTCCTTACTATACTTTTAACATATTA GCTGGAATAGATGAAAATGGCAAAGGTGTATTATATAGTTATGATGCCATTGGTTCATAT TATCAATCAACACATGCATGTACAGGTAGTGGGTCATCTCTTATCTTACCCATATTAGAT AATAGGGTTGAACAAAAAAATCAATTAATTAAAAATATGGATTTTAATTTACGAGATGAT ATTAATTTTGTTAAAGACGCTATGACATCTGCAACCGAAAGAGACATATATACAGGTGAT AAAGCAGAAATTTATATTATTGATAATTTGGGAATAAATACTACATTATTAGACTTAAAA CAAGATTAA
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  • Fasta :-

    MEILQLNSNIVEKKKTEENEAAIEHARPSKRWNPYIDNGGTVIGLTGNNYVILAGDTRLS LSYSIYTRNCPKISKITDKCIIGSSGMQSDIKTLHSLLQKKIQLFYLEHSHYPSIHVIAK LLCVTLYSRRFFPYYTFNILAGIDENGKGVLYSYDAIGSYYQSTHACTGSGSSLILPILD NRVEQKNQLIKNMDFNLRDDINFVKDAMTSATERDIYTGDKAEIYIIDNLGINTTLLDLK QD

  • title: active site
  • coordinates: G40,D56,R58,K72,S170,D215,T218,G219
No Results
No Results
IDSitePeptideScoreMethod
PBANKA_123310029 SHARPSKRWN0.996unsp

PBANKA_123310      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India