PBANKA_1242100 | methionine aminopeptidase 1a, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1242100OTHER0.6044270.0002330.395340
No Results

  • Fasta :-

    >PBANKA_1242100 MPYLYKNWATRFSHISKQKCNFHTYVLTPKINKIRVSETSLFKPTLEDGKYKIIPSKKVP THIKSPSYAKTGVVECSNNIYEIKDEDSIIKMKRAAKIAASCLKLCLENSKEGITTEEID NLAFNFYIENNAYPAGINFHGFPKTVCASPNEVVCHGIPNLRKLKNKDIITYDCTVYFDG VFGDCAGTTGIGNISEKHKKLIEVSKECLYKAISICRDGQKFSEIGRIITEHAHKNGFNV IKDFCGHFIGSNMHMYPLIEHHYPNSHEQNEYMKKGQIFTIEPILTEGSISIHTWKDQWT VCTNDNSFCSQWEHTILITDNSAEILTECE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1242100.fa Sequence name : PBANKA_1242100 Sequence length : 330 VALUES OF COMPUTED PARAMETERS Coef20 : 3.909 CoefTot : -1.586 ChDiff : 1 ZoneTo : 37 KR : 7 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.482 0.776 0.093 0.451 MesoH : -0.778 0.046 -0.392 0.182 MuHd_075 : 20.051 17.128 6.982 4.916 MuHd_095 : 32.619 22.409 10.223 7.246 MuHd_100 : 32.261 21.391 9.326 7.372 MuHd_105 : 25.128 19.786 7.788 6.478 Hmax_075 : 6.533 18.667 2.028 5.973 Hmax_095 : 14.800 10.000 1.421 5.230 Hmax_100 : 14.800 10.000 0.777 5.230 Hmax_105 : 12.800 11.400 -0.510 1.520 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1850 0.8150 DFMC : 0.2297 0.7703 This protein is probably imported in mitochondria. f(Ser) = 0.0811 f(Arg) = 0.0541 CMi = 0.55659 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 330 PBANKA_1242100 MPYLYKNWATRFSHISKQKCNFHTYVLTPKINKIRVSETSLFKPTLEDGKYKIIPSKKVPTHIKSPSYAKTGVVECSNNI 80 YEIKDEDSIIKMKRAAKIAASCLKLCLENSKEGITTEEIDNLAFNFYIENNAYPAGINFHGFPKTVCASPNEVVCHGIPN 160 LRKLKNKDIITYDCTVYFDGVFGDCAGTTGIGNISEKHKKLIEVSKECLYKAISICRDGQKFSEIGRIITEHAHKNGFNV 240 IKDFCGHFIGSNMHMYPLIEHHYPNSHEQNEYMKKGQIFTIEPILTEGSISIHTWKDQWTVCTNDNSFCSQWEHTILITD 320 NSAEILTECE 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1242100 6 -MPYLYK|NW 0.061 . PBANKA_1242100 11 YKNWATR|FS 0.124 . PBANKA_1242100 17 RFSHISK|QK 0.071 . PBANKA_1242100 19 SHISKQK|CN 0.067 . PBANKA_1242100 30 TYVLTPK|IN 0.060 . PBANKA_1242100 33 LTPKINK|IR 0.052 . PBANKA_1242100 35 PKINKIR|VS 0.113 . PBANKA_1242100 43 SETSLFK|PT 0.057 . PBANKA_1242100 50 PTLEDGK|YK 0.054 . PBANKA_1242100 52 LEDGKYK|II 0.065 . PBANKA_1242100 57 YKIIPSK|KV 0.081 . PBANKA_1242100 58 KIIPSKK|VP 0.086 . PBANKA_1242100 64 KVPTHIK|SP 0.090 . PBANKA_1242100 70 KSPSYAK|TG 0.055 . PBANKA_1242100 84 NNIYEIK|DE 0.084 . PBANKA_1242100 91 DEDSIIK|MK 0.061 . PBANKA_1242100 93 DSIIKMK|RA 0.071 . PBANKA_1242100 94 SIIKMKR|AA 0.277 . PBANKA_1242100 97 KMKRAAK|IA 0.148 . PBANKA_1242100 104 IAASCLK|LC 0.056 . PBANKA_1242100 111 LCLENSK|EG 0.058 . PBANKA_1242100 144 NFHGFPK|TV 0.098 . PBANKA_1242100 162 HGIPNLR|KL 0.071 . PBANKA_1242100 163 GIPNLRK|LK 0.075 . PBANKA_1242100 165 PNLRKLK|NK 0.116 . PBANKA_1242100 167 LRKLKNK|DI 0.122 . PBANKA_1242100 197 IGNISEK|HK 0.073 . PBANKA_1242100 199 NISEKHK|KL 0.078 . PBANKA_1242100 200 ISEKHKK|LI 0.132 . PBANKA_1242100 206 KLIEVSK|EC 0.061 . PBANKA_1242100 211 SKECLYK|AI 0.093 . PBANKA_1242100 217 KAISICR|DG 0.082 . PBANKA_1242100 221 ICRDGQK|FS 0.077 . PBANKA_1242100 227 KFSEIGR|II 0.097 . PBANKA_1242100 235 ITEHAHK|NG 0.067 . PBANKA_1242100 242 NGFNVIK|DF 0.084 . PBANKA_1242100 274 EQNEYMK|KG 0.060 . PBANKA_1242100 275 QNEYMKK|GQ 0.091 . PBANKA_1242100 296 ISIHTWK|DQ 0.079 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1242100 ATGCCATATTTGTATAAAAACTGGGCCACTCGCTTTTCCCATATATCAAAACAGAAATGT AATTTTCATACATATGTATTAACACCAAAAATAAATAAAATTAGGGTATCTGAAACATCT TTATTTAAACCAACCTTAGAAGATGGGAAATATAAAATTATACCTTCTAAAAAAGTTCCA ACACATATAAAATCCCCAAGCTATGCTAAAACGGGAGTTGTGGAATGCTCTAATAATATT TACGAAATTAAAGATGAAGATAGTATTATTAAGATGAAAAGGGCTGCAAAAATAGCAGCA AGTTGCTTAAAATTATGTTTAGAAAATTCAAAAGAAGGTATAACAACAGAGGAGATTGAC AATTTAGCATTTAATTTTTATATAGAAAACAACGCCTATCCTGCTGGAATAAATTTCCAT GGCTTTCCTAAAACTGTGTGTGCATCACCAAACGAGGTGGTGTGTCATGGGATACCAAAT TTAAGGAAATTAAAAAACAAGGATATAATAACTTATGATTGTACAGTTTATTTTGATGGC GTATTTGGTGATTGTGCTGGAACAACAGGAATAGGTAATATTTCAGAAAAACACAAAAAA TTGATCGAAGTGAGTAAAGAATGCCTTTATAAAGCTATTTCAATATGTAGAGATGGCCAA AAATTTTCAGAAATTGGAAGAATAATTACAGAACATGCTCATAAAAATGGTTTTAATGTA ATTAAAGATTTTTGCGGCCATTTTATTGGATCAAATATGCATATGTACCCATTAATTGAG CATCATTATCCTAATAGTCACGAACAAAATGAATATATGAAAAAAGGTCAAATATTTACT ATAGAACCTATATTAACTGAAGGAAGTATAAGCATTCATACTTGGAAAGATCAATGGACT GTTTGTACTAATGATAATTCTTTTTGCTCACAATGGGAACATACTATTTTAATAACAGAC AACTCTGCTGAAATATTAACAGAATGTGAATAA
  • Download Fasta

  • Fasta :-

    MPYLYKNWATRFSHISKQKCNFHTYVLTPKINKIRVSETSLFKPTLEDGKYKIIPSKKVP THIKSPSYAKTGVVECSNNIYEIKDEDSIIKMKRAAKIAASCLKLCLENSKEGITTEEID NLAFNFYIENNAYPAGINFHGFPKTVCASPNEVVCHGIPNLRKLKNKDIITYDCTVYFDG VFGDCAGTTGIGNISEKHKKLIEVSKECLYKAISICRDGQKFSEIGRIITEHAHKNGFNV IKDFCGHFIGSNMHMYPLIEHHYPNSHEQNEYMKKGQIFTIEPILTEGSISIHTWKDQWT VCTNDNSFCSQWEHTILITDNSAEILTECE

  • title: active site
  • coordinates: H156,D173,D184,H247,E282,E313
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PBANKA_124210      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India