PBANKA_1316000 | DER1-like protein, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0020011      

  • Curated_GO_Components:  apicoplast      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:  ubiquitin-dependent ERAD pathway      

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1316000SP0.1548960.8444650.000639CS pos: 18-19. IIG-IK. Pr: 0.4124
No Results

  • Fasta :-

    >PBANKA_1316000 MKMYIFYYVLLFFIYIIGIKDVRVECRKKYHIKKILKGFTNKLIYNEIRGKNSNSINSVI YKRNILFHIRIPKKTLQGRNLFSNDIRNKKINEFLQKKKNSCYLHINSNVNEIKKKRDRI LKNVFINAKLLQEYFNNFKSSLLYKYKNTKIITKLFLSTSFLVMILNVFGLRPEDIALHA KRIIRAFEFYRIITSALFYGDISLYVLTNIYMLYLQSQELEKSVGSSETLAFYLSQITIL SAICSYIKKPFYSTALLKSLLFTNCMLNPYNKSNLIFGINIYNMYLPYLSIVIDILHAQD FKASLSGILGIISGYIYYISNIYLLEKCNKKFFKIPQILRNYLDSFNTDEFVF
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1316000.fa Sequence name : PBANKA_1316000 Sequence length : 353 VALUES OF COMPUTED PARAMETERS Coef20 : 4.123 CoefTot : -0.860 ChDiff : 31 ZoneTo : 20 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.141 2.294 0.403 0.945 MesoH : 0.321 0.824 -0.144 0.401 MuHd_075 : 9.557 10.198 4.344 2.717 MuHd_095 : 11.420 14.376 3.052 2.410 MuHd_100 : 4.613 12.390 1.115 1.487 MuHd_105 : 10.842 12.849 2.888 2.101 Hmax_075 : 17.617 23.567 4.516 7.887 Hmax_095 : 22.100 20.913 5.111 7.525 Hmax_100 : 19.100 19.400 3.169 7.200 Hmax_105 : 23.100 24.500 4.276 8.983 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8180 0.1820 DFMC : 0.9383 0.0617
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 353 PBANKA_1316000 MKMYIFYYVLLFFIYIIGIKDVRVECRKKYHIKKILKGFTNKLIYNEIRGKNSNSINSVIYKRNILFHIRIPKKTLQGRN 80 LFSNDIRNKKINEFLQKKKNSCYLHINSNVNEIKKKRDRILKNVFINAKLLQEYFNNFKSSLLYKYKNTKIITKLFLSTS 160 FLVMILNVFGLRPEDIALHAKRIIRAFEFYRIITSALFYGDISLYVLTNIYMLYLQSQELEKSVGSSETLAFYLSQITIL 240 SAICSYIKKPFYSTALLKSLLFTNCMLNPYNKSNLIFGINIYNMYLPYLSIVIDILHAQDFKASLSGILGIISGYIYYIS 320 NIYLLEKCNKKFFKIPQILRNYLDSFNTDEFVF 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1316000 2 -----MK|MY 0.062 . PBANKA_1316000 20 IYIIGIK|DV 0.069 . PBANKA_1316000 23 IGIKDVR|VE 0.069 . PBANKA_1316000 27 DVRVECR|KK 0.098 . PBANKA_1316000 28 VRVECRK|KY 0.087 . PBANKA_1316000 29 RVECRKK|YH 0.098 . PBANKA_1316000 33 RKKYHIK|KI 0.090 . PBANKA_1316000 34 KKYHIKK|IL 0.108 . PBANKA_1316000 37 HIKKILK|GF 0.065 . PBANKA_1316000 42 LKGFTNK|LI 0.071 . PBANKA_1316000 49 LIYNEIR|GK 0.083 . PBANKA_1316000 51 YNEIRGK|NS 0.062 . PBANKA_1316000 62 INSVIYK|RN 0.063 . PBANKA_1316000 63 NSVIYKR|NI 0.149 . PBANKA_1316000 70 NILFHIR|IP 0.077 . PBANKA_1316000 73 FHIRIPK|KT 0.146 . PBANKA_1316000 74 HIRIPKK|TL 0.089 . PBANKA_1316000 79 KKTLQGR|NL 0.082 . PBANKA_1316000 87 LFSNDIR|NK 0.098 . PBANKA_1316000 89 SNDIRNK|KI 0.066 . PBANKA_1316000 90 NDIRNKK|IN 0.221 . PBANKA_1316000 97 INEFLQK|KK 0.063 . PBANKA_1316000 98 NEFLQKK|KN 0.098 . PBANKA_1316000 99 EFLQKKK|NS 0.079 . PBANKA_1316000 114 SNVNEIK|KK 0.063 . PBANKA_1316000 115 NVNEIKK|KR 0.100 . PBANKA_1316000 116 VNEIKKK|RD 0.090 . PBANKA_1316000 117 NEIKKKR|DR 0.187 . PBANKA_1316000 119 IKKKRDR|IL 0.100 . PBANKA_1316000 122 KRDRILK|NV 0.179 . PBANKA_1316000 129 NVFINAK|LL 0.064 . PBANKA_1316000 139 EYFNNFK|SS 0.058 . PBANKA_1316000 145 KSSLLYK|YK 0.092 . PBANKA_1316000 147 SLLYKYK|NT 0.072 . PBANKA_1316000 150 YKYKNTK|II 0.071 . PBANKA_1316000 154 NTKIITK|LF 0.053 . PBANKA_1316000 172 LNVFGLR|PE 0.088 . PBANKA_1316000 181 DIALHAK|RI 0.070 . PBANKA_1316000 182 IALHAKR|II 0.239 . PBANKA_1316000 185 HAKRIIR|AF 0.259 . PBANKA_1316000 191 RAFEFYR|II 0.106 . PBANKA_1316000 222 QSQELEK|SV 0.148 . PBANKA_1316000 248 AICSYIK|KP 0.055 . PBANKA_1316000 249 ICSYIKK|PF 0.088 . PBANKA_1316000 258 YSTALLK|SL 0.069 . PBANKA_1316000 272 MLNPYNK|SN 0.079 . PBANKA_1316000 302 LHAQDFK|AS 0.064 . PBANKA_1316000 327 NIYLLEK|CN 0.060 . PBANKA_1316000 330 LLEKCNK|KF 0.068 . PBANKA_1316000 331 LEKCNKK|FF 0.088 . PBANKA_1316000 334 CNKKFFK|IP 0.071 . PBANKA_1316000 340 KIPQILR|NY 0.083 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1316000 ATGAAAATGTATATTTTTTATTACGTGTTATTATTTTTTATATACATAATTGGAATAAAA GATGTTCGCGTTGAATGCAGAAAAAAATATCATATAAAAAAAATACTCAAGGGGTTTACA AATAAGTTAATATATAATGAAATTAGGGGAAAAAATTCAAACAGTATAAACAGTGTAATT TATAAAAGAAATATTCTTTTCCATATAAGAATCCCAAAAAAAACACTTCAAGGACGCAAT TTATTTAGCAATGATATACGAAATAAAAAAATCAATGAATTTCTGCAAAAAAAAAAAAAT TCATGTTACCTACACATAAATAGTAATGTTAATGAAATTAAAAAAAAAAGAGATAGAATC CTAAAAAATGTATTTATAAATGCTAAACTATTACAAGAATATTTTAATAATTTTAAATCA TCATTACTTTATAAATATAAAAATACAAAAATTATAACAAAATTGTTTTTATCAACATCT TTTCTAGTTATGATACTTAATGTATTTGGTTTAAGACCTGAAGATATTGCATTACACGCT AAGAGAATTATAAGAGCCTTTGAATTTTATAGAATTATAACTTCTGCTTTGTTTTATGGT GACATTTCATTATATGTATTAACAAATATTTATATGCTTTATTTACAAAGCCAAGAGCTA GAAAAATCAGTAGGATCATCAGAAACACTTGCTTTTTATTTATCACAAATTACGATATTA TCTGCTATATGCTCGTATATAAAAAAGCCATTTTATTCAACAGCGTTGTTGAAATCTTTA TTATTTACAAACTGTATGCTAAACCCATATAACAAATCGAACTTAATATTTGGTATAAAT ATATACAATATGTATTTGCCTTATTTATCAATTGTTATTGATATTTTACATGCTCAAGAT TTTAAAGCTTCCTTATCTGGAATATTGGGTATAATAAGTGGATATATTTATTATATTTCA AATATTTATTTATTGGAAAAATGTAATAAAAAGTTTTTTAAAATTCCCCAAATATTAAGG AATTACCTTGATTCATTCAATACTGATGAATTTGTTTTTTAA
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  • Fasta :-

    MKMYIFYYVLLFFIYIIGIKDVRVECRKKYHIKKILKGFTNKLIYNEIRGKNSNSINSVI YKRNILFHIRIPKKTLQGRNLFSNDIRNKKINEFLQKKKNSCYLHINSNVNEIKKKRDRI LKNVFINAKLLQEYFNNFKSSLLYKYKNTKIITKLFLSTSFLVMILNVFGLRPEDIALHA KRIIRAFEFYRIITSALFYGDISLYVLTNIYMLYLQSQELEKSVGSSETLAFYLSQITIL SAICSYIKKPFYSTALLKSLLFTNCMLNPYNKSNLIFGINIYNMYLPYLSIVIDILHAQD FKASLSGILGIISGYIYYISNIYLLEKCNKKFFKIPQILRNYLDSFNTDEFVF

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PBANKA_131600      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India