PBANKA_1324100 | ubiquitin carboxyl-terminal hydrolase isozyme L3, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1324100OTHER0.9999740.0000220.000004
No Results

  • Fasta :-

    >PBANKA_1324100 MTKKKKWIPIESNPDSLYLYSCKLGQQKLSFVDIYGFNKDLLDMIPKPVHAIIFLYPIKD DIDNSIGSSHINTTNGDINIWFIKQTVSNSCGTIALLHLFANLRNTFPLDKDSVLDTFFT KVDNLKPEGRALEFENNDIIEQLHHEFSGNELNLGESIDVDTHFIVFLEINGMLIELDGR KNHPIIHGQTTSNNFVYDAGKLIQDNFISKYQDCHSFSAIAIVPNNAV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1324100.fa Sequence name : PBANKA_1324100 Sequence length : 228 VALUES OF COMPUTED PARAMETERS Coef20 : 3.350 CoefTot : -0.705 ChDiff : -10 ZoneTo : 10 KR : 4 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.976 1.171 0.037 0.540 MesoH : -0.508 0.301 -0.408 0.257 MuHd_075 : 14.912 4.996 2.750 2.156 MuHd_095 : 16.314 6.938 3.943 1.347 MuHd_100 : 10.070 2.302 2.581 1.277 MuHd_105 : 4.456 5.650 0.372 2.973 Hmax_075 : 1.400 1.200 -2.598 1.400 Hmax_095 : -2.887 -0.350 -3.450 0.586 Hmax_100 : -0.100 -1.400 -2.661 1.450 Hmax_105 : -7.000 -1.867 -4.845 1.450 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9517 0.0483 DFMC : 0.9139 0.0861
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 228 PBANKA_1324100 MTKKKKWIPIESNPDSLYLYSCKLGQQKLSFVDIYGFNKDLLDMIPKPVHAIIFLYPIKDDIDNSIGSSHINTTNGDINI 80 WFIKQTVSNSCGTIALLHLFANLRNTFPLDKDSVLDTFFTKVDNLKPEGRALEFENNDIIEQLHHEFSGNELNLGESIDV 160 DTHFIVFLEINGMLIELDGRKNHPIIHGQTTSNNFVYDAGKLIQDNFISKYQDCHSFSAIAIVPNNAV 240 ................................................................................ 80 ................................................................................ 160 .................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1324100 3 ----MTK|KK 0.060 . PBANKA_1324100 4 ---MTKK|KK 0.089 . PBANKA_1324100 5 --MTKKK|KW 0.162 . PBANKA_1324100 6 -MTKKKK|WI 0.096 . PBANKA_1324100 23 LYLYSCK|LG 0.063 . PBANKA_1324100 28 CKLGQQK|LS 0.060 . PBANKA_1324100 39 DIYGFNK|DL 0.068 . PBANKA_1324100 47 LLDMIPK|PV 0.084 . PBANKA_1324100 59 IFLYPIK|DD 0.063 . PBANKA_1324100 84 INIWFIK|QT 0.064 . PBANKA_1324100 104 HLFANLR|NT 0.083 . PBANKA_1324100 111 NTFPLDK|DS 0.056 . PBANKA_1324100 121 LDTFFTK|VD 0.057 . PBANKA_1324100 126 TKVDNLK|PE 0.075 . PBANKA_1324100 130 NLKPEGR|AL 0.106 . PBANKA_1324100 180 LIELDGR|KN 0.089 . PBANKA_1324100 181 IELDGRK|NH 0.067 . PBANKA_1324100 201 FVYDAGK|LI 0.062 . PBANKA_1324100 210 QDNFISK|YQ 0.066 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1324100 ATGACAAAAAAAAAAAAATGGATACCAATAGAATCGAATCCCGATTCGTTGTATTTGTAC TCTTGTAAACTTGGACAACAAAAGTTAAGTTTTGTAGACATTTATGGTTTTAACAAGGAT TTATTAGATATGATACCCAAACCTGTTCACGCAATAATATTCTTATATCCAATAAAGGAT GATATAGACAATAGCATTGGTTCAAGCCACATAAATACAACAAATGGTGATATCAACATT TGGTTCATAAAGCAAACCGTCTCAAATTCTTGTGGTACTATAGCACTTTTGCATTTGTTT GCAAATTTGAGGAATACATTTCCATTAGATAAAGATTCTGTATTGGATACATTTTTTACT AAAGTTGACAACCTAAAACCGGAAGGACGCGCACTGGAATTCGAGAATAATGATATTATT GAACAACTACACCATGAGTTTTCTGGAAATGAATTAAATTTAGGAGAAAGCATTGATGTT GATACACATTTTATTGTGTTCTTAGAAATAAATGGAATGCTAATCGAATTGGATGGAAGA AAAAATCATCCCATAATTCATGGCCAAACCACGAGCAACAATTTTGTATACGATGCTGGG AAATTAATCCAAGATAACTTTATAAGCAAGTATCAAGATTGCCACAGTTTTTCTGCCATT GCAATTGTCCCAAATAATGCAGTATAA
  • Download Fasta

  • Fasta :-

    MTKKKKWIPIESNPDSLYLYSCKLGQQKLSFVDIYGFNKDLLDMIPKPVHAIIFLYPIKD DIDNSIGSSHINTTNGDINIWFIKQTVSNSCGTIALLHLFANLRNTFPLDKDSVLDTFFT KVDNLKPEGRALEFENNDIIEQLHHEFSGNELNLGESIDVDTHFIVFLEINGMLIELDGR KNHPIIHGQTTSNNFVYDAGKLIQDNFISKYQDCHSFSAIAIVPNNAV

  • title: catalytic site
  • coordinates: Q85,C91,H163,D178
No Results
No Results
IDSitePeptideScoreMethod
PBANKA_1324100113 SLDKDSVLDT0.994unsp

PBANKA_132410      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India